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Release 0.1.0!
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standage committed May 13, 2017
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# Change Log
All notable changes to this project will be documented in this file.
This project adheres to [Semantic Versioning](http://semver.org/).

## [0.1.0] - 2017-05-13
### Added
- Command-line interface with 8 subcommands
- `dump`: discard reads that match reference completely
- `count`: compute k-mer abundances for all samples
- `novel`: identify "interesting" (potentially novel) k-mers
- `filter`: re-compute k-mer abundances, discard false positives and contamination
- `assemble`: assemble reads for a single variant
- `collect`: collect and filter (legacy)
- `mutate`: simulate variants on a genome
- `reaugment`: re-attach interesting k-mer annotations to reads
- Extensive test suite
- Continuous integration configuration

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