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# Change Log | ||
All notable changes to this project will be documented in this file. | ||
This project adheres to [Semantic Versioning](http://semver.org/). | ||
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## [0.1.0] - 2017-05-13 | ||
### Added | ||
- Command-line interface with 8 subcommands | ||
- `dump`: discard reads that match reference completely | ||
- `count`: compute k-mer abundances for all samples | ||
- `novel`: identify "interesting" (potentially novel) k-mers | ||
- `filter`: re-compute k-mer abundances, discard false positives and contamination | ||
- `assemble`: assemble reads for a single variant | ||
- `collect`: collect and filter (legacy) | ||
- `mutate`: simulate variants on a genome | ||
- `reaugment`: re-attach interesting k-mer annotations to reads | ||
- Extensive test suite | ||
- Continuous integration configuration |