Compensatory changes for latest khmer

Makefile

@@ -1,3 +1,5 @@
+SHELL=bash
+
 devenv:
 	pip install --upgrade pip setuptools pytest pytest-cov pep8 cython sphinx
 
@@ -14,9 +16,9 @@ doc:
 	cd docs && make html
 
 loc:
-	@- echo "\n\n===== Core kevlar ====="
+	@- echo -e "\n\n===== Core kevlar ====="
 	cloc --exclude-list-file=.cloc.exclude kevlar/*.py
-	@- echo "\n\n===== kevlar CLI ====="
+	@- echo -e "\n\n===== kevlar CLI ====="
 	cloc kevlar/cli/*.py
-	@- echo "\n\n===== kevlar tests ====="
+	@- echo -e "\n\n===== kevlar tests ====="
 	cloc kevlar/tests/test_*.py

kevlar/sketch.py

@@ -113,7 +113,7 @@ def autoload(infile, count=True, graph=False, ksize=31, table_size=1e4,
         sketch = allocate(ksize, table_size, num_tables, count=count,
                           graph=graph, smallcount=False)
         if num_bands:
-            assert band > 0 and band <= num_bands
+            assert band >= 0 and band < num_bands
             sketch.consume_seqfile_banding(infile, num_bands, band)
         else:
             sketch.consume_seqfile(infile)

kevlar/tests/test_sketch.py

@@ -79,5 +79,5 @@ def test_autoload():
 
     sketch3 = kevlar.sketch.autoload(infile, ksize=25, table_size=1e7,
                                      count=True, graph=True, num_bands=4,
-                                     band=3)
+                                     band=0)
     assert sketch3.get('CAGCTGACCCACCGACACATAGGTT') > 0

requirements.txt

@@ -1,2 +1,2 @@
 networkx
--e git+https://github.com/dib-lab/khmer.git@feature/consume_bitsplit#egg=khmer
+git+https://github.com/dib-lab/khmer.git