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Smart filtering GO for Display on Gene Summary Page #111

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pfey03 opened this issue Aug 29, 2018 · 1 comment
Closed

Smart filtering GO for Display on Gene Summary Page #111

pfey03 opened this issue Aug 29, 2018 · 1 comment

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@pfey03
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pfey03 commented Aug 29, 2018

This is the follow up from recent conversations and replaces
#107, which has some older ideas that now evolved.

Display of GO annotations on the Gene Summary Page is filtered for each GO Aspect (MF, BP and CC). So for each aspect, the following rules apply:

  1. If EXP annotations are present -> Display NO Manual or IEA annotations

  2. If no EXP are available BUT Manual -> Display Manual but NO IEAs

  3. If no EXP and no Manual are available -> Display IEAs

  4. For all evidence categories, EXP, Other Manual, and IEAs, display only 5 most recent annotations

  5. Display:
    GO term + extension| With | Evidence

Here are some real annotations for gene svkA and how they should be listed on Gene Summary Page

Molecular Function:

protein serine/threonine kinase activity (IDA)
protein kinase activity has_input sevA (IDA
protein binding with cepL (IPI)

Biological Process:

protein phosphorylation has_input sevA (IDA)
regulation of actin cytoskeleton organization (IMP)
positive regulation of cell division (IMP)

Cellular Component:

cytoplasm exists_during mitotic interphase (IDA)
centromere exists_during mitotic cytokinesis (IDA)

All extensions and also the 'with' in italic. All Dicty genes in extensions like here cepL and sevA, should be linked to those genes.

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