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This is the follow up from recent conversations and replaces #107, which has some older ideas that now evolved.
Display of GO annotations on the Gene Summary Page is filtered for each GO Aspect (MF, BP and CC). So for each aspect, the following rules apply:
If EXP annotations are present -> Display NO Manual or IEA annotations
If no EXP are available BUT Manual -> Display Manual but NO IEAs
If no EXP and no Manual are available -> Display IEAs
For all evidence categories, EXP, Other Manual, and IEAs, display only 5 most recent annotations
Display: GO term + extension| With | Evidence
Here are some real annotations for gene svkA and how they should be listed on Gene Summary Page
protein serine/threonine kinase activity (IDA) protein kinase activity has_input sevA (IDA protein binding with cepL (IPI)
protein phosphorylation has_input sevA (IDA) regulation of actin cytoskeleton organization (IMP) positive regulation of cell division (IMP)
cytoplasm exists_during mitotic interphase (IDA) centromere exists_during mitotic cytokinesis (IDA)
All extensions and also the 'with' in italic. All Dicty genes in extensions like here cepL and sevA, should be linked to those genes.
The text was updated successfully, but these errors were encountered:
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cybersiddhu
erichartline
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This is the follow up from recent conversations and replaces
#107, which has some older ideas that now evolved.
Display of GO annotations on the Gene Summary Page is filtered for each GO Aspect (MF, BP and CC). So for each aspect, the following rules apply:
If EXP annotations are present -> Display NO Manual or IEA annotations
If no EXP are available BUT Manual -> Display Manual but NO IEAs
If no EXP and no Manual are available -> Display IEAs
For all evidence categories, EXP, Other Manual, and IEAs, display only 5 most recent annotations
Display:
GO term + extension| With | Evidence
Here are some real annotations for gene svkA and how they should be listed on Gene Summary Page
Molecular Function:
protein serine/threonine kinase activity (IDA)
protein kinase activity has_input sevA (IDA
protein binding with cepL (IPI)
Biological Process:
protein phosphorylation has_input sevA (IDA)
regulation of actin cytoskeleton organization (IMP)
positive regulation of cell division (IMP)
Cellular Component:
cytoplasm exists_during mitotic interphase (IDA)
centromere exists_during mitotic cytokinesis (IDA)
All extensions and also the 'with' in italic. All Dicty genes in extensions like here cepL and sevA, should be linked to those genes.
The text was updated successfully, but these errors were encountered: