add some bad samples to the testing data set #3

reefgenomics · Jul 14, 2019 · df870ff · df870ff
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commit df870ff
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Showing 10 changed files with 16,005 additions and 1 deletion.
diff --git a/tests/data/smith_subsampled_data/lite/no_sym_0.1_subsampled.fastq b/tests/data/smith_subsampled_data/lite/no_sym_0.1_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/lite/no_sym_0.2_subsampled.fastq b/tests/data/smith_subsampled_data/lite/no_sym_0.2_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/lite/no_sym_1.1_subsampled.fastq b/tests/data/smith_subsampled_data/lite/no_sym_1.1_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/lite/no_sym_1.2_subsampled.fastq b/tests/data/smith_subsampled_data/lite/no_sym_1.2_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/lite/test_data_submission_input_lite.csv b/tests/data/smith_subsampled_data/lite/test_data_submission_input_lite.csv
@@ -3,3 +3,5 @@ sample_name,fastq_fwd_file_name,fastq_rev_file_name,sample_type,host_phylum,host
 A01,A01.1_subsampled.fastq,A01.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
 C01,C01.1_subsampled.fastq,C01.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
 Y01,Y01.1_subsampled.fastq,Y01.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
+no_sym_0,no_sym_0.1_subsampled.fastq,no_sym_0.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
+no_sym_1,no_sym_1.1_subsampled.fastq,no_sym_1.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
diff --git a/tests/data/smith_subsampled_data/no_sym_0.1_subsampled.fastq b/tests/data/smith_subsampled_data/no_sym_0.1_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/no_sym_0.2_subsampled.fastq b/tests/data/smith_subsampled_data/no_sym_0.2_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/no_sym_1.1_subsampled.fastq b/tests/data/smith_subsampled_data/no_sym_1.1_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/no_sym_1.2_subsampled.fastq b/tests/data/smith_subsampled_data/no_sym_1.2_subsampled.fastq
diff --git a/tests/data/smith_subsampled_data/test_data_submission_input.csv b/tests/data/smith_subsampled_data/test_data_submission_input.csv
@@ -41,4 +41,6 @@ Y10,Y10.1_subsampled.fastq,Y10.2_subsampled.fastq,coral,cnidaria,anthozoa,sclera
 Y11,Y11.1_subsampled.fastq,Y11.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
 Y12,Y12.1_subsampled.fastq,Y12.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
 Y13,Y13.1_subsampled.fastq,Y13.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
-Y15,Y15.1_subsampled.fastq,Y15.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
+Y15,Y15.1_subsampled.fastq,Y15.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
+no_sym_0,no_sym_0.1_subsampled.fastq,no_sym_0.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12
+no_sym_1,no_sym_1.1_subsampled.fastq,no_sym_1.2_subsampled.fastq,coral,cnidaria,anthozoa,scleractinia,poritidae,porites,lobata,24.339216,53.059163,18.06.86,0-12