Add support for Eagle machine

[djgroen]

No description provided.

[djgroen]

@mvassaux Any update on this yet? :)

[mvassaux]

the configuration has been commited and pushed, it seemed to work when I try the Dummy version (very useful for testing btw), I get the following messages:

fab eagle lammps_dummy:lammps_dummy,cores=1,wall_time=1:00:0
[maxime@None] Executing task 'eagle'
[plgvassaux@eagle.man.poznan.pl] Executing task 'lammps_dummy'
[plgvassaux@eagle.man.poznan.pl] Executing task 'put_configs'
[plgvassaux@eagle.man.poznan.pl] run: mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/config_files; mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/results; mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/scripts; mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/config_files/lammps_dummy
[plgvassaux@eagle.man.poznan.pl] Login password for 'plgvassaux': 
[plgvassaux@eagle.man.poznan.pl] rsync_project: rsync  -pthrvz  --rsh='ssh  -p 22  ' /home/maxime/local_projects/FabSim3/config_files/lammps_dummy/ plgvassaux@eagle.man.poznan.pl:/tmp/lustre_shared/plgvassaux/FabSim3/config_files/lammps_dummy
[localhost] local: rsync  -pthrvz  --rsh='ssh  -p 22  ' /home/maxime/local_projects/FabSim3/config_files/lammps_dummy/ plgvassaux@eagle.man.poznan.pl:/tmp/lustre_shared/plgvassaux/FabSim3/config_files/lammps_dummy
plgvassaux@eagle.man.poznan.pl's password: 
sending incremental file list

sent 62 bytes  received 11 bytes  16.22 bytes/sec
total size is 678  speedup is 9.29
[localhost] local: git rev-parse HEAD
stdout: 3361bb65323d75ea6a2d6941d8373b535174a662
stderr: 
[plgvassaux@eagle.man.poznan.pl] put: /home/maxime/local_projects/FabSim3/deploy/.jobscripts/lammps_dummy_eagle_1.sh -> /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh
[plgvassaux@eagle.man.poznan.pl] run: mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/results/lammps_dummy_eagle_1
[localhost] local: cat /home/maxime/.bash_history | grep fab
stdout: fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab localhost install_plugin:FabMD
fab localhost setup_fabsim_dirs
vim /home/maxime/local_projects/FabSim3/fabfile.py
fab localhost setup_fabsim_dirs
fab localhost setup_fabsim
which fab
cat fabfile.py 
vim setup_fabsim.py 
fab localhost setup_fabsim
vim fabfile.py 
fab localhost setup_fabsim
fab localhost setup_fabsim
fab localhost setup_fabsim_dirs
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
vim fabfile.py 
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab eagle lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
stderr: 
[plgvassaux@eagle.man.poznan.pl] run: cp /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh /tmp/lustre_shared/plgvassaux/FabSim3/results/lammps_dummy_eagle_1
[plgvassaux@eagle.man.poznan.pl] put: /tmp/tmpgef1viyw -> /tmp/lustre_shared/plgvassaux/FabSim3/results/lammps_dummy_eagle_1/env.yml
[plgvassaux@eagle.man.poznan.pl] run: chmod u+x /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh
[plgvassaux@eagle.man.poznan.pl] run: sbatch /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh
[plgvassaux@eagle.man.poznan.pl] out: ===============================================================================
[plgvassaux@eagle.man.poznan.pl] out:                    Poznan Supercomputing and Networking Center
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out:                                eagle.man.poznan.pl
[plgvassaux@eagle.man.poznan.pl] out: ===============================================================================
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out:                  'module load' works only on Wn(worker nodes)!
[plgvassaux@eagle.man.poznan.pl] out:              To use module load please create job/interactive job.
[plgvassaux@eagle.man.poznan.pl] out:  Here you will find more information about how to create/submmit jobs on eagle
[plgvassaux@eagle.man.poznan.pl] out: https://wiki.man.poznan.pl/hpc/index.php?title=Podr%C4%99cznik_u%C5%BCytkownika
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out: ===============================================================================
[plgvassaux@eagle.man.poznan.pl] out:                                   Best Regards
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out:                                    hpc admins
[plgvassaux@eagle.man.poznan.pl] out: ===============================================================================
[plgvassaux@eagle.man.poznan.pl] out: 
[plgvassaux@eagle.man.poznan.pl] out: Submitted batch job 8905978
[plgvassaux@eagle.man.poznan.pl] out: 


Done.
Disconnecting from plgvassaux@eagle.man.poznan.pl... done.

[mvassaux]

I have a question though, how do I get back the results when the submitted job is complete? Is this automated?

[djgroen]

@mvassaux

Simple: just type
fab eagle fetch_results

The results will then be in a subdirectory of the results directory of your local installation.

[mvassaux]

cheers 👍

[djgroen]

Okay, it seems that this works, so I'll prepare the alpha release now :).