project_description.md

CAMIProfilingVisualization

A collection of tools to visualize CAMI profiling outputs

Installation

Use conda

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda create -c etetoolkit -y -n CAMIViz python=3.7 numpy  ete3  seaborn pandas matplotlib biom-format
conda activate CAMIViz

Example usage

python src/profile_to_plot.py -i data/prediction_multi.profile -g data/ground_truth_multi.profile -b test -s sample_0 genus

This should result in a plot that visually represents the relative abundance of the taxonomic profiles produced by numerous taxonomic profiling methods. An example plot can be found here