R data package for IA-SVA

This R package includes various data examples for IA-SVA: Lee et. al. (2018). All data simulation code and results used in the manuscript are publicly available at iasvaExample website.

Installation

To install this package, start R and enter the following commands:

  library(devtools)
  devtools::install_github("dleelab/iasvaExamples")

Load the package

To load this package, enter the following command to the R console:

  library(iasvaExamples)

Data List

Human Islet single cell RNA-seq data from Lawlor et. al. (2016)

Lawlor_Islet_scRNAseq_Read_Counts: Gene-level read counts
Lawlor_Islet_scRNAseq_Annotations: Annotations describing the islet samples and experimental settings

Usage:

  data("Lawlor_Islet_scRNAseq_Read_Counts")
  data("Lawlor_Islet_scRNAseq_Annotations")

Human Brain single cell RNA-seq data from Darmanis et. al. (2015)

Darmanis_Brain_scRNAseq_Read_Counts: Gene-level read counts
Darmanis_Brain_scRNAseq_Annotations: Annotations describing the brain samples and experimental settings

Usage:

  data("Darmanis_Brain_scRNAseq_Read_Counts")
  data("Darmanis_Brain_scRNAseq_Annotations")

Human Islet single cell RNA-seq data from Xin et. al. (2016)

Xin_Islet_scRNAseq_Read_Counts: Gene-level read counts
Xin_Islet_scRNAseq_Annotations: Annotations describing the islet samples and experimental settings

Usage:

  data("Xin_Islet_scRNAseq_Read_Counts")
  data("Xin_Islet_scRNAseq_Annotations")