fix rocksort test compilation

dnanexus-archive · Apr 8, 2015 · f07b312 · f07b312
1 parent 47cc9e8
commit f07b312
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/test/rocksort/test.sh b/test/rocksort/test.sh
@@ -38,7 +38,7 @@ echo "Shuffling $TEST_BAM..."
 $samtools rocksort -u 0 -l 1 $TEST_BAM "${testdir}/samtools_rocksort_test_shuffled"
 
 # Compile and test bamsorted.c (FIXME ugly)
-cc -o bamsorted -O2 ${srcdir}/bamsorted.c -I"$htslibdir" -I"$samtoolsdir" "$htslibdir/libhts.a" "$samtoolsdir/libbam.a" "$htslibdir/faidx.o" -lz -lpthread
+cc -o bamsorted -O2 ${srcdir}/bamsorted.c -I"$htslibdir" -I"$samtoolsdir" "$htslibdir/libhts.a" "$samtoolsdir/libbam.a" -lz -lpthread
 echo -n "Positive control: "
 ./bamsorted "$TEST_BAM"
 echo -n "Negative control: "