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What does the rest of your Dockerfile look like? If you have a USER line previously that is not root, then that user probably won't have permission to chown the file.
Command in DockerFile:
RUN chown -R tms /usr/local/tomcat/webapps/webservices-0.0.1-20160824.053225-11.war
Log:
Step 13 : RUN chown -R tms /usr/local/tomcat/webapps/webservices-0.0.1-20160824.053225-11.war
---> Running in 9855537059c2
chown: changing ownership of ‘/usr/local/tomcat/webapps/webservices-0.0.1-20160824.053225-11.war’: Operation not permitted
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