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@alcaeus this is indeed fixed with your branch. Tested with doctrine/doctrine-bundle 1.11.2 and doctrine/data-fixtures (dev-fix-schema-filters 92c9d05)
I also double-checked it doesn't work with doctrine/doctrine-bundle 1.11.2 and doctrine/data-fixtures v1.3.1
ORMPurger completely ignores the Configuration::setSchemaAssetsFilter becauses it still relies on the deprecated setFilterSchemaAssetsExpression
With the latest Symfony DoctrineBundle, setSchemaAssetsFilter is used and deletes all schemas
See doctrine/DoctrineBundle#935
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