examples/notebook/Bionya.ipynb

{
 "metadata": {
  "language": "ruby",
  "name": ""
 },
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 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "require 'nyaplot'\n",
      "require 'bionya'"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<script type='text/javascript'>if(window['d3'] === undefined ||\n",
        "   window['Nyaplot'] === undefined){\n",
        "    var path = {\"d3\":\"http://d3js.org/d3.v3.min\"};\n",
        "\n",
        "\n",
        "\n",
        "    var shim = {\"d3\":{\"exports\":\"d3\"}};\n",
        "\n",
        "    require.config({paths: path, shim:shim});\n",
        "\n",
        "\n",
        "require(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\n",
        "\n",
        "\tvar script = d3.select(\"head\")\n",
        "\t    .append(\"script\")\n",
        "\t    .attr(\"src\", \"https://rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\")\n",
        "\t    .attr(\"async\", true);\n",
        "\n",
        "\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\n",
        "\n",
        "\n",
        "\t    var event = document.createEvent(\"HTMLEvents\");\n",
        "\t    event.initEvent(\"load_nyaplot\",false,false);\n",
        "\t    window.dispatchEvent(event);\n",
        "\t    console.log('Finished loading Nyaplotjs');\n",
        "\n",
        "\t};\n",
        "\n",
        "\n",
        "});\n",
        "}\n",
        "</script>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 1,
       "text": [
        "\"if(window['d3'] === undefined ||\\n   window['Nyaplot'] === undefined){\\n    var path = {\\\"d3\\\":\\\"http://d3js.org/d3.v3.min\\\"};\\n\\n\\n\\n    var shim = {\\\"d3\\\":{\\\"exports\\\":\\\"d3\\\"}};\\n\\n    require.config({paths: path, shim:shim});\\n\\n\\nrequire(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\\n\\n\\tvar script = d3.select(\\\"head\\\")\\n\\t    .append(\\\"script\\\")\\n\\t    .attr(\\\"src\\\", \\\"https://rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\\\")\\n\\t    .attr(\\\"async\\\", true);\\n\\n\\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\\n\\n\\n\\t    var event = document.createEvent(\\\"HTMLEvents\\\");\\n\\t    event.initEvent(\\\"load_nyaplot\\\",false,false);\\n\\t    window.dispatchEvent(event);\\n\\t    console.log('Finished loading Nyaplotjs');\\n\\n\\t};\\n\\n\\n});\\n}\\n\""
       ]
      },
      {
       "html": [
        "<script type='text/javascript'>if(window['d3'] === undefined ||\n",
        "   window['Nyaplot'] === undefined){\n",
        "    var path = {\"d3\":\"http://d3js.org/d3.v3.min\",\"Bionya\":\"https://rawgit.com/domitry/nyaplot/master/lib/bionya/js/release/bionya\"};\n",
        "\n",
        "\n",
        "\n",
        "    var shim = {\"d3\":{\"exports\":\"d3\"},\"Bionya\":{\"exports\":\"Bionya\"}};\n",
        "\n",
        "    require.config({paths: path, shim:shim});\n",
        "\n",
        "\n",
        "require(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\n",
        "\n",
        "\tvar script = d3.select(\"head\")\n",
        "\t    .append(\"script\")\n",
        "\t    .attr(\"src\", \"https://rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\")\n",
        "\t    .attr(\"async\", true);\n",
        "\n",
        "\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\n",
        "\n",
        "require(['Bionya'], function(Bionya){window['Bionya']=Bionya;console.log('finished loading Bionya');\n",
        "\t    var event = document.createEvent(\"HTMLEvents\");\n",
        "\t    event.initEvent(\"load_nyaplot\",false,false);\n",
        "\t    window.dispatchEvent(event);\n",
        "\t    console.log('Finished loading Nyaplotjs');\n",
        "});\n",
        "\t};\n",
        "\n",
        "\n",
        "});\n",
        "}\n",
        "</script>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 1,
       "text": [
        "\"if(window['d3'] === undefined ||\\n   window['Nyaplot'] === undefined){\\n    var path = {\\\"d3\\\":\\\"http://d3js.org/d3.v3.min\\\",\\\"Bionya\\\":\\\"https://rawgit.com/domitry/nyaplot/master/lib/bionya/js/release/bionya\\\"};\\n\\n\\n\\n    var shim = {\\\"d3\\\":{\\\"exports\\\":\\\"d3\\\"},\\\"Bionya\\\":{\\\"exports\\\":\\\"Bionya\\\"}};\\n\\n    require.config({paths: path, shim:shim});\\n\\n\\nrequire(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\\n\\n\\tvar script = d3.select(\\\"head\\\")\\n\\t    .append(\\\"script\\\")\\n\\t    .attr(\\\"src\\\", \\\"https://rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\\\")\\n\\t    .attr(\\\"async\\\", true);\\n\\n\\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\\n\\nrequire(['Bionya'], function(Bionya){window['Bionya']=Bionya;console.log('finished loading Bionya');\\n\\t    var event = document.createEvent(\\\"HTMLEvents\\\");\\n\\t    event.initEvent(\\\"load_nyaplot\\\",false,false);\\n\\t    window.dispatchEvent(event);\\n\\t    console.log('Finished loading Nyaplotjs');\\n});\\n\\t};\\n\\n\\n});\\n}\\n\""
       ]
      },
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 1,
       "text": [
        "true"
       ]
      }
     ],
     "prompt_number": 1
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "arr = []\n",
      "10.times do |i|\n",
      "  arr.push({group: 'group' + i.to_s ,df: Nyaplot::DataFrame.new({axis: ['a', 'b', 'c'], val: [2, 3, 4]})})\n",
      "end\n",
      "df = Nyaplot::DataFrame.new(arr)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<table><tr><th>group</th><th>df</th></tr><tr><td>group0</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group1</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group2</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group3</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group4</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group5</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group6</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group7</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group8</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr><tr><td>group9</td><td><table><tr><th>axis</th><th>val</th></tr><tr><td>a</td><td>2</td></tr><tr><td>b</td><td>3</td></tr><tr><td>c</td><td>4</td></tr></table></td></tr></table>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 4,
       "text": [
        "#<Nyaplot::DataFrame:0xb996d944 @name=\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\", @rows=[{:group=>\"group0\", :df=>#<Nyaplot::DataFrame:0xb996f5dc @name=\"f7d4ef4a-1c00-49cd-bec1-fd1c0fc0bb1f\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group1\", :df=>#<Nyaplot::DataFrame:0xb996f30c @name=\"336b1c89-2307-45a2-baa9-e449b8a5a024\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group2\", :df=>#<Nyaplot::DataFrame:0xb996f03c @name=\"464c69b0-e967-4aa7-bfa9-fe47e91ce582\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group3\", :df=>#<Nyaplot::DataFrame:0xb996ed30 @name=\"c60857de-0518-4d07-9b91-e8a9e91d3e4a\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group4\", :df=>#<Nyaplot::DataFrame:0xb996ea24 @name=\"ab823e1a-3ccd-4b0a-bea4-040e3be2bdb0\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group5\", :df=>#<Nyaplot::DataFrame:0xb996e754 @name=\"911bc623-1e5c-41db-8601-3c7382444c5c\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group6\", :df=>#<Nyaplot::DataFrame:0xb996e448 @name=\"6d0f7751-9577-4d77-9549-919200c25363\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group7\", :df=>#<Nyaplot::DataFrame:0xb996e178 @name=\"7cf0b371-4985-4e3e-a5c7-c3692c8f8f87\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group8\", :df=>#<Nyaplot::DataFrame:0xb996dea8 @name=\"9a25432b-ce0e-4f98-9d03-0475a002fd4b\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group9\", :df=>#<Nyaplot::DataFrame:0xb996db9c @name=\"a053e7e2-5ddb-4066-8a08-1c15b5221bf0\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}]>"
       ]
      }
     ],
     "prompt_number": 4
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "plot = Nyaplot::CircularPlot.new(df, :group, :df)\n",
      "plot.to_json"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 5,
       "text": [
        "\"{\\\"diagrams\\\":[],\\\"options\\\":{\\\"zoom\\\":true,\\\"width\\\":800,\\\"height\\\":800,\\\"axis_extra_options\\\":{\\\"group_by\\\":\\\"group\\\",\\\"color\\\":[\\\"#253494\\\"],\\\"inner_num\\\":0,\\\"outer_num\\\":1,\\\"df_id\\\":\\\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\\\"}},\\\"axis_extra_options\\\":{\\\"group_by\\\":\\\"group\\\",\\\"color\\\":[\\\"#253494\\\"],\\\"inner_num\\\":0,\\\"outer_num\\\":1,\\\"df_id\\\":\\\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\\\"},\\\"extension\\\":\\\"Bionya\\\"}\""
       ]
      }
     ],
     "prompt_number": 5
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "plot.add(1, :arc, :axis, :val)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 6,
       "text": [
        "#<Nyaplot::Diagram:0xb99a5830 @properties={:type=>:arc, :options=>{:x=>:axis, :y=>:val, :range=>[0, 4], :layer=>1}, :data=>\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\"}>"
       ]
      }
     ],
     "prompt_number": 6
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "plot.show"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<div id='vis-54d10d0b-88b1-44a6-ad7d-6e53ea985c84'></div>\n",
        "<script>\n",
        "(function(){\n",
        "    var render = function(){\n",
        "        var model = {\"panes\":[{\"diagrams\":[{\"type\":\"arc\",\"options\":{\"x\":\"axis\",\"y\":\"val\",\"range\":[0,4],\"layer\":1},\"data\":\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\"}],\"options\":{\"zoom\":true,\"width\":800,\"height\":800,\"axis_extra_options\":{\"group_by\":\"group\",\"color\":[\"#253494\"],\"inner_num\":0,\"outer_num\":2,\"df_id\":\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\",\"axis\":\"axis\"}},\"axis_extra_options\":{\"group_by\":\"group\",\"color\":[\"#253494\"],\"inner_num\":0,\"outer_num\":2,\"df_id\":\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\",\"axis\":\"axis\"},\"extension\":\"Bionya\"}],\"data\":{\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\":[{\"group\":\"group0\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group1\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group2\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group3\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group4\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group5\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group6\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group7\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group8\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]},{\"group\":\"group9\",\"df\":[{\"axis\":\"a\",\"val\":2},{\"axis\":\"b\",\"val\":3},{\"axis\":\"c\",\"val\":4}]}]},\"extension\":[\"Bionya\"]}\n",
        "        Nyaplot.core.parse(model, '#vis-54d10d0b-88b1-44a6-ad7d-6e53ea985c84');\n",
        "    };\n",
        "    if(window['Nyaplot']==undefined){\n",
        "        window.addEventListener('load_nyaplot', render, false);\n",
        "\treturn;\n",
        "    }\n",
        "    render();\n",
        "})();\n",
        "</script>\n"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 7,
       "text": [
        "#<Nyaplot::Frame:0xb99bd818 @properties={:panes=>[#<Nyaplot::CircularPlot:0xb9988ec4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb99a5830 @properties={:type=>:arc, :options=>{:x=>:axis, :y=>:val, :range=>[0, 4], :layer=>1}, :data=>\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\"}>], :options=>{:zoom=>true, :width=>800, :height=>800, :axis_extra_options=>{:group_by=>:group, :color=>[\"#253494\"], :inner_num=>0, :outer_num=>2, :df_id=>\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\", :axis=>:axis}}, :axis_extra_options=>{:group_by=>:group, :color=>[\"#253494\"], :inner_num=>0, :outer_num=>2, :df_id=>\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\", :axis=>:axis}, :extension=>\"Bionya\"}, @df=#<Nyaplot::DataFrame:0xb996d944 @name=\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\", @rows=[{:group=>\"group0\", :df=>#<Nyaplot::DataFrame:0xb996f5dc @name=\"f7d4ef4a-1c00-49cd-bec1-fd1c0fc0bb1f\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group1\", :df=>#<Nyaplot::DataFrame:0xb996f30c @name=\"336b1c89-2307-45a2-baa9-e449b8a5a024\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group2\", :df=>#<Nyaplot::DataFrame:0xb996f03c @name=\"464c69b0-e967-4aa7-bfa9-fe47e91ce582\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group3\", :df=>#<Nyaplot::DataFrame:0xb996ed30 @name=\"c60857de-0518-4d07-9b91-e8a9e91d3e4a\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group4\", :df=>#<Nyaplot::DataFrame:0xb996ea24 @name=\"ab823e1a-3ccd-4b0a-bea4-040e3be2bdb0\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group5\", :df=>#<Nyaplot::DataFrame:0xb996e754 @name=\"911bc623-1e5c-41db-8601-3c7382444c5c\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group6\", :df=>#<Nyaplot::DataFrame:0xb996e448 @name=\"6d0f7751-9577-4d77-9549-919200c25363\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group7\", :df=>#<Nyaplot::DataFrame:0xb996e178 @name=\"7cf0b371-4985-4e3e-a5c7-c3692c8f8f87\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group8\", :df=>#<Nyaplot::DataFrame:0xb996dea8 @name=\"9a25432b-ce0e-4f98-9d03-0475a002fd4b\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group9\", :df=>#<Nyaplot::DataFrame:0xb996db9c @name=\"a053e7e2-5ddb-4066-8a08-1c15b5221bf0\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}]>, @inner_num=0, @outer_num=2, @nested_label=:df, @axis=:axis>], :data=>{\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\"=>#<Nyaplot::DataFrame:0xb996d944 @name=\"1c90358b-9b01-4bd7-a7a2-b2a1ab97e3c3\", @rows=[{:group=>\"group0\", :df=>#<Nyaplot::DataFrame:0xb996f5dc @name=\"f7d4ef4a-1c00-49cd-bec1-fd1c0fc0bb1f\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group1\", :df=>#<Nyaplot::DataFrame:0xb996f30c @name=\"336b1c89-2307-45a2-baa9-e449b8a5a024\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group2\", :df=>#<Nyaplot::DataFrame:0xb996f03c @name=\"464c69b0-e967-4aa7-bfa9-fe47e91ce582\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group3\", :df=>#<Nyaplot::DataFrame:0xb996ed30 @name=\"c60857de-0518-4d07-9b91-e8a9e91d3e4a\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group4\", :df=>#<Nyaplot::DataFrame:0xb996ea24 @name=\"ab823e1a-3ccd-4b0a-bea4-040e3be2bdb0\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group5\", :df=>#<Nyaplot::DataFrame:0xb996e754 @name=\"911bc623-1e5c-41db-8601-3c7382444c5c\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group6\", :df=>#<Nyaplot::DataFrame:0xb996e448 @name=\"6d0f7751-9577-4d77-9549-919200c25363\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group7\", :df=>#<Nyaplot::DataFrame:0xb996e178 @name=\"7cf0b371-4985-4e3e-a5c7-c3692c8f8f87\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group8\", :df=>#<Nyaplot::DataFrame:0xb996dea8 @name=\"9a25432b-ce0e-4f98-9d03-0475a002fd4b\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}, {:group=>\"group9\", :df=>#<Nyaplot::DataFrame:0xb996db9c @name=\"a053e7e2-5ddb-4066-8a08-1c15b5221bf0\", @rows=[{:axis=>\"a\", :val=>2}, {:axis=>\"b\", :val=>3}, {:axis=>\"c\", :val=>4}]>}]>}, :extension=>[\"Bionya\"]}>"
       ]
      }
     ],
     "prompt_number": 7
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df = Nyaplot::DataFrame.from_csv('./data/circular/category.csv')"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<table><tr><th>name</th><th>size</th></tr><tr><td>chr1</td><td>249250621</td></tr><tr><td>chr2</td><td>243199373</td></tr><tr><td>chr3</td><td>198022430</td></tr><tr><td>chr4</td><td>191154276</td></tr><tr><td>chr5</td><td>180915260</td></tr><tr><td>chr6</td><td>171115067</td></tr><tr><td>chr7</td><td>159138663</td></tr><tr><td>chr8</td><td>146364022</td></tr><tr><td>chr9</td><td>141213431</td></tr><tr><td>chr10</td><td>135534747</td></tr><tr><td>chr11</td><td>135006516</td></tr><tr><td>chr12</td><td>133851895</td></tr><tr><td>chr13</td><td>115169878</td></tr><tr><td>chr14</td><td>107349540</td></tr><tr><td>chr15</td><td>102531392</td></tr><tr><td>chr16</td><td>90354753</td></tr><tr><td>...</td><td>...</td></tr><tr><td>chry</td><td>59373566</td></tr></table>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 8,
       "text": [
        "#<Nyaplot::DataFrame:0xb9a1a284 @name=\"0d432e38-5829-4223-a7b1-400807f7ba5b\", @rows=[{:name=>\"chr1\", :size=>249250621}, {:name=>\"chr2\", :size=>243199373}, {:name=>\"chr3\", :size=>198022430}, {:name=>\"chr4\", :size=>191154276}, {:name=>\"chr5\", :size=>180915260}, {:name=>\"chr6\", :size=>171115067}, {:name=>\"chr7\", :size=>159138663}, {:name=>\"chr8\", :size=>146364022}, {:name=>\"chr9\", :size=>141213431}, {:name=>\"chr10\", :size=>135534747}, {:name=>\"chr11\", :size=>135006516}, {:name=>\"chr12\", :size=>133851895}, {:name=>\"chr13\", :size=>115169878}, {:name=>\"chr14\", :size=>107349540}, {:name=>\"chr15\", :size=>102531392}, {:name=>\"chr16\", :size=>90354753}, {:name=>\"chr17\", :size=>81195210}, {:name=>\"chr18\", :size=>78077248}, {:name=>\"chr19\", :size=>59128983}, {:name=>\"chr20\", :size=>63025520}, {:name=>\"chr21\", :size=>48129895}, {:name=>\"chr22\", :size=>51304566}, {:name=>\"chrx\", :size=>155270560}, {:name=>\"chry\", :size=>59373566}]>"
       ]
      }
     ],
     "prompt_number": 8
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df2 = Nyaplot::DataFrame.from_csv('./data/circular/hgmd.tsv', {col_sep: \"\\t\"})"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<table><tr><th>gene_name</th><th>start</th><th>end</th><th>num1</th><th>num2</th></tr><tr><td>hs1</td><td>182554557</td><td>187554557</td><td>0.0</td><td>12.0</td></tr><tr><td>hs1</td><td>223284528</td><td>228284528</td><td>0.0</td><td>15.0</td></tr><tr><td>hs1</td><td>43804340</td><td>48804340</td><td>0.0</td><td>1.0</td></tr><tr><td>hs1</td><td>20972111</td><td>25972111</td><td>0.0</td><td>2.0</td></tr><tr><td>hs1</td><td>1650845</td><td>6650845</td><td>0.0</td><td>21.0</td></tr><tr><td>hs1</td><td>223284444</td><td>228284444</td><td>0.0</td><td>1.0</td></tr><tr><td>hs1</td><td>12252955</td><td>17252955</td><td>0.0</td><td>10.0</td></tr><tr><td>hs1</td><td>45797505</td><td>50797505</td><td>0.0</td><td>3.0</td></tr><tr><td>hs1</td><td>226555302</td><td>231555302</td><td>0.0</td><td>9.0</td></tr><tr><td>hs1</td><td>20977000</td><td>25977000</td><td>0.0</td><td>14.0</td></tr><tr><td>hs1</td><td>182551337</td><td>187551337</td><td>0.0</td><td>17.0</td></tr><tr><td>hs1</td><td>8030994</td><td>13030994</td><td>0.0</td><td>1.0</td></tr><tr><td>hs1</td><td>55638075</td><td>60638075</td><td>0.0</td><td>20.0</td></tr><tr><td>hs1</td><td>223285200</td><td>228285200</td><td>0.0</td><td>3.0</td></tr><tr><td>hs1</td><td>223284599</td><td>228284599</td><td>0.0</td><td>7.0</td></tr><tr><td>hs10</td><td>72195439</td><td>77195439</td><td>0.0</td><td>10.0</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>hsX</td><td>153284192</td><td>158284192</td><td>0.0</td><td>12.0</td></tr></table>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 9,
       "text": [
        "#<Nyaplot::DataFrame:0xb8ecb838 @name=\"556fd468-666c-4206-93bd-ccd11c398cc2\", @rows=[{:gene_name=>\"hs1\", :start=>182554557, :end=>187554557, :num1=>0.0, :num2=>12.0}, {:gene_name=>\"hs1\", :start=>223284528, :end=>228284528, :num1=>0.0, :num2=>15.0}, {:gene_name=>\"hs1\", :start=>43804340, :end=>48804340, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs1\", :start=>20972111, :end=>25972111, :num1=>0.0, :num2=>2.0}, {:gene_name=>\"hs1\", :start=>1650845, :end=>6650845, :num1=>0.0, :num2=>21.0}, {:gene_name=>\"hs1\", :start=>223284444, :end=>228284444, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs1\", :start=>12252955, :end=>17252955, :num1=>0.0, :num2=>10.0}, {:gene_name=>\"hs1\", :start=>45797505, :end=>50797505, :num1=>0.0, :num2=>3.0}, {:gene_name=>\"hs1\", :start=>226555302, :end=>231555302, :num1=>0.0, :num2=>9.0}, {:gene_name=>\"hs1\", :start=>20977000, :end=>25977000, :num1=>0.0, :num2=>14.0}, {:gene_name=>\"hs1\", :start=>182551337, :end=>187551337, :num1=>0.0, :num2=>17.0}, {:gene_name=>\"hs1\", :start=>8030994, :end=>13030994, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs1\", :start=>55638075, :end=>60638075, :num1=>0.0, :num2=>20.0}, {:gene_name=>\"hs1\", :start=>223285200, :end=>228285200, :num1=>0.0, :num2=>3.0}, {:gene_name=>\"hs1\", :start=>223284599, :end=>228284599, :num1=>0.0, :num2=>7.0}, {:gene_name=>\"hs10\", :start=>72195439, :end=>77195439, :num1=>0.0, :num2=>10.0}, {:gene_name=>\"hs10\", :start=>16919052, :end=>21919052, :num1=>0.0, :num2=>2.0}, {:gene_name=>\"hs10\", :start=>123310871, :end=>128310871, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs10\", :start=>131506283, :end=>136506283, :num1=>0.0, :num2=>3.0}, {:gene_name=>\"hs10\", :start=>43620335, :end=>48620335, :num1=>0.0, :num2=>2.0}, {:gene_name=>\"hs10\", :start=>102295836, :end=>107295836, :num1=>0.0, :num2=>4.0}, {:gene_name=>\"hs10\", :start=>22839628, :end=>27839628, :num1=>0.0, :num2=>10.0}, {:gene_name=>\"hs10\", :start=>131565064, :end=>136565064, :num1=>0.0, :num2=>8.0}, {:gene_name=>\"hs10\", :start=>121086097, :end=>126086097, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs10\", :start=>90762801, :end=>95762801, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs10\", :start=>43610119, :end=>48610119, :num1=>0.0, :num2=>11.0}, {:gene_name=>\"hs10\", :start=>131565170, :end=>136565170, :num1=>0.0, :num2=>5.0}, {:gene_name=>\"hs10\", :start=>68040325, :end=>73040325, :num1=>0.0, :num2=>10.0}, {:gene_name=>\"hs10\", :start=>97174352, :end=>102174352, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs11\", :start=>108175462, :end=>113175462, :num1=>0.0, :num2=>2.0}, {:gene_name=>\"hs11\", :start=>67353579, :end=>72353579, :num1=>0.0, :num2=>2.0}, {:gene_name=>\"hs11\", :start=>67250676, :end=>72250676, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs11\", :start=>67202156, :end=>72202156, :num1=>0.0, :num2=>3.0}, {:gene_name=>\"hs11\", :start=>68201295, :end=>73201295, :num1=>0.0, :num2=>1.0}, {:gene_name=>\"hs11\", :start=>67352689, :end=>72352689, :num1=>0.0, :num2=>13.0}, 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       ]
      }
     ],
     "prompt_number": 9
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df3 = Nyaplot::DataFrame.from_csv('./data/circular/genes_hgmd.tsv', {col_sep: \"\\t\"})"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<table><tr><th>gene_name</th><th>start</th><th>end</th><th>name</th></tr><tr><td>hs1</td><td>182554557</td><td>182555057</td><td>RNASEL</td></tr><tr><td>hs1</td><td>223284528</td><td>223285028</td><td>TLR5</td></tr><tr><td>hs1</td><td>43804340</td><td>43804840</td><td>MPL</td></tr><tr><td>hs1</td><td>20972111</td><td>20972611</td><td>PINK1</td></tr><tr><td>hs1</td><td>1650845</td><td>1651345</td><td>CDK11A</td></tr><tr><td>hs1</td><td>223284444</td><td>223284944</td><td>TLR5</td></tr><tr><td>hs1</td><td>12252955</td><td>12253455</td><td>TNFRSF1B</td></tr><tr><td>hs1</td><td>45797505</td><td>45798005</td><td>MUTYH</td></tr><tr><td>hs1</td><td>226555302</td><td>226555802</td><td>PARP1</td></tr><tr><td>hs1</td><td>20977000</td><td>20977500</td><td>PINK1</td></tr><tr><td>hs1</td><td>182551337</td><td>182551837</td><td>RNASEL</td></tr><tr><td>hs1</td><td>8030994</td><td>8031494</td><td>PARK7</td></tr><tr><td>hs1</td><td>55638075</td><td>55638575</td><td>USP24</td></tr><tr><td>hs1</td><td>223285200</td><td>223285700</td><td>TLR5</td></tr><tr><td>hs1</td><td>223284599</td><td>223285099</td><td>TLR5</td></tr><tr><td>hs10</td><td>72195439</td><td>72195939</td><td>NODAL</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>hsX</td><td>153284192</td><td>153284692</td><td>IRAK1</td></tr></table>"
       ],
       "metadata": {},
       "output_type": "pyout",
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       "text": [
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{:gene_name=>\"hsX\", :start=>153278829, :end=>153279329, :name=>\"IRAK1\"}, {:gene_name=>\"hsX\", :start=>153284192, :end=>153284692, :name=>\"IRAK1\"}]>"
       ]
      }
     ],
     "prompt_number": 10
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "hash2 = {}\n",
      "df3.each_row do |row|\n",
      "  chr_name = \"chr\" + row[:gene_name].match(/hs(.+)/)[1]\n",
      "  hash2[chr_name] ||= []\n",
      "  hash2[chr_name].push({locale: row[:start], name: row[:name]})\n",
      "end\n",
      "\"\""
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 11,
       "text": [
        "\"\""
       ]
      }
     ],
     "prompt_number": 11
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "hash = {}\n",
      "df2.each_row do |row|\n",
      "  chr_name = \"chr\" + row[:gene_name].match(/hs(.+)/)[1]\n",
      "  hash[chr_name] ||= []\n",
      "  hash[chr_name].push({start: row[:start], val: row[:num2]})\n",
      "end\n",
      "\"\""
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 12,
       "text": [
        "\"\""
       ]
      }
     ],
     "prompt_number": 12
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "bin_size = df.size.max/50\n",
      "chr_name = df.column(:name).to_a\n",
      "nested = df.column(:size).to_a.map.with_index do |size, i|\n",
      "  vals = hash[chr_name[i]]\n",
      "  names = hash2[chr_name[i]]\n",
      "  vals = [] if vals.nil?\n",
      "  names = [] if names.nil?\n",
      "  raw = Array.new(size/bin_size, 0).map.with_index {|val, i|\n",
      "    val = vals.reduce(0){|memo, v| next memo + v[:val] if v[:start] > i*bin_size && v[:start] < (i+1)*bin_size; memo}\n",
      "    name = names.select {|name| name[:locale] > i*bin_size && name[:locale] < (i+1)*bin_size}\n",
      "    {axis: i*bin_size, val: val, name: (name.length==0 ? '' : name[0][:name])}\n",
      "  }\n",
      "  Nyaplot::DataFrame.new(raw)\n",
      "end\n",
      "df.df = nested\n",
      "df"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<table><tr><th>name</th><th>size</th><th>df</th></tr><tr><td>chr1</td><td>249250621</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>21.0</td><td>CDK11A</td></tr><tr><td>4985012</td><td>1.0</td><td>PARK7</td></tr><tr><td>9970024</td><td>10.0</td><td>TNFRSF1B</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>16.0</td><td>PINK1</td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>1.0</td><td>MPL</td></tr><tr><td>44865108</td><td>3.0</td><td>MUTYH</td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>20.0</td><td>USP24</td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>244265588</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr2</td><td>243199373</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>11.0</td><td>ROCK2</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>5.0</td><td>MSH6</td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>234295564</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr3</td><td>198022430</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>12.0</td><td>XPC</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>10.0</td><td>MLH1</td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>11.0</td><td>MST1</td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>189430456</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr4</td><td>191154276</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>17.0</td><td>GRK4</td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>15.0</td><td>PPARGC1A</td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>10.0</td><td>TLR1</td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>13.0</td><td>KDR</td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>10.0</td><td>BTC</td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>184445444</td><td>33.0</td><td>CASP3</td></tr></table></td></tr><tr><td>chr5</td><td>180915260</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>1.0</td><td>DNAH5</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>4.0</td><td>ITGA2</td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>8.0</td><td>PIK3R1</td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>10.0</td><td>THBS4</td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>174475420</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr6</td><td>171115067</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>30.0</td><td>EHMT2</td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>1.0</td><td>SLC29A1</td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>4.0</td><td>PKHD1</td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>164505396</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr7</td><td>159138663</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>1.0</td><td>MAD1L1</td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>2.0</td><td>GLI3</td></tr><tr><td>44865108</td><td>11.0</td><td>IGFBP1</td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>11.0</td><td>EGFR</td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>149550360</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr8</td><td>146364022</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>1.0</td><td>BLK</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>7.0</td><td>TNFRSF10A</td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>11.0</td><td>WRN</td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>139580336</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr9</td><td>141213431</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>9.0</td><td>KDM4C</td></tr><tr><td>9970024</td><td>18.0</td><td>CER1</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>134595324</td><td>12.0</td><td>CARD9</td></tr></table></td></tr><tr><td>chr10</td><td>135534747</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>2.0</td><td>CUBN</td></tr><tr><td>19940048</td><td>10.0</td><td>PIP4K2A</td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>13.0</td><td>RET</td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>10.0</td><td>CTNNA3</td></tr><tr><td>69790168</td><td>10.0</td><td>NODAL</td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>129610312</td><td>16.0</td><td>MGMT</td></tr></table></td></tr><tr><td>chr11</td><td>135006516</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>10.0</td><td>PTPRJ</td></tr><tr><td>49850120</td><td>0</td><td></td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>21.0</td><td>GSTP1</td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>129610312</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr12</td><td>133851895</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>1.0</td><td>FGF23</td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>5.0</td><td>CDKN1B</td></tr><tr><td>14955036</td><td>13.0</td><td>PIK3C2G</td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>10.0</td><td>LRRK2</td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>1.0</td><td>ATF1</td></tr><tr><td>54835132</td><td>17.0</td><td>GLI1</td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>124625300</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr13</td><td>115169878</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>18.0</td><td>BRCA2</td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>15.0</td><td>SETDB2</td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>109670264</td><td>12.0</td><td>COL4A1</td></tr></table></td></tr><tr><td>chr14</td><td>107349540</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>9.0</td><td>RPGRIP1</td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>12.0</td><td>BMP4</td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>7.0</td><td>PRKCH</td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>1.0</td><td>PSEN1</td></tr><tr><td>74775180</td><td>1.0</td><td>MLH3</td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>99700240</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr15</td><td>102531392</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>33.0</td><td>TP53BP1</td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>5.0</td><td>TRPM7</td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>94715228</td><td>0</td><td></td></tr></table></td></tr><tr><td>chr16</td><td>90354753</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>3.0</td><td>NTHL1</td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>1.0</td><td>ERCC4</td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>7.0</td><td>PALB2</td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>1.0</td><td>RPGRIP1L</td></tr><tr><td>54835132</td><td>0</td><td></td></tr><tr><td>59820144</td><td>0</td><td></td></tr><tr><td>64805156</td><td>0</td><td></td></tr><tr><td>69790168</td><td>0</td><td></td></tr><tr><td>74775180</td><td>0</td><td></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>84745204</td><td>0</td><td></td></tr></table></td></tr><tr><td>...</td><td>...</td><td>...</td></tr><tr><td>chry</td><td>59373566</td><td><table><tr><th>axis</th><th>val</th><th>name</th></tr><tr><td>0</td><td>0</td><td></td></tr><tr><td>4985012</td><td>0</td><td></td></tr><tr><td>9970024</td><td>0</td><td></td></tr><tr><td>14955036</td><td>0</td><td></td></tr><tr><td>19940048</td><td>0</td><td></td></tr><tr><td>24925060</td><td>0</td><td></td></tr><tr><td>29910072</td><td>0</td><td></td></tr><tr><td>34895084</td><td>0</td><td></td></tr><tr><td>39880096</td><td>0</td><td></td></tr><tr><td>44865108</td><td>0</td><td></td></tr><tr><td>49850120</td><td>0</td><td></td></tr></table></td></tr></table>"
       ],
       "metadata": {},
       "output_type": "pyout",
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     ],
     "prompt_number": 13
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df.name = df.column(:name).to_a.map{|name| name.match(/chr(.+)/)[1]}\n",
      "df"
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     "language": "python",
     "metadata": {},
     "outputs": [
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      }
     ],
     "prompt_number": 14
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "color = Nyaplot::Colors.qual"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<table><tr><th>rgb(251,180,174)</th><th>rgb(179,205,227)</th><th>rgb(204,235,197)</th><th>rgb(222,203,228)</th><th>rgb(254,217,166)</th><th>rgb(255,255,204)</th><th>rgb(229,216,189)</th><th>rgb(253,218,236)</th><th>rgb(242,242,242)</th></tr><tr><td style=\"background-color:rgb(251,180,174);\">&nbsp;</td><td style=\"background-color:rgb(179,205,227);\">&nbsp;</td><td style=\"background-color:rgb(204,235,197);\">&nbsp;</td><td style=\"background-color:rgb(222,203,228);\">&nbsp;</td><td style=\"background-color:rgb(254,217,166);\">&nbsp;</td><td style=\"background-color:rgb(255,255,204);\">&nbsp;</td><td style=\"background-color:rgb(229,216,189);\">&nbsp;</td><td style=\"background-color:rgb(253,218,236);\">&nbsp;</td><td style=\"background-color:rgb(242,242,242);\">&nbsp;</td></tr></table>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 15,
       "text": [
        "#<Nyaplot::Color:0xb9a5d6ec @source=[\"rgb(251,180,174)\", \"rgb(179,205,227)\", \"rgb(204,235,197)\", \"rgb(222,203,228)\", \"rgb(254,217,166)\", \"rgb(255,255,204)\", \"rgb(229,216,189)\", \"rgb(253,218,236)\", \"rgb(242,242,242)\"]>"
       ]
      }
     ],
     "prompt_number": 15
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "plot2 = Nyaplot::CircularPlot.new(df, :name, :df)\n",
      "arc = plot2.add(1, :arc, :axis, :val)\n",
      "arc.color([\"rgb(56,108,176)\"])\n",
      "labels = plot2.add(2, :labels, :axis, :name)\n",
      "labels.text_size(\"0.3em\")\n",
      "plot2.color(color)\n",
      "plot2.text_size(\"0.5em\")\n",
      "plot2.text_color(\"#000\")\n",
      "plot2.show"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<div id='vis-2e1358f3-6ec7-46fa-86d0-a46a3cad3f50'></div>\n",
        "<script>\n",
        "(function(){\n",
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        "        Nyaplot.core.parse(model, '#vis-2e1358f3-6ec7-46fa-86d0-a46a3cad3f50');\n",
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     ],
     "prompt_number": 16
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "from=[]; to=[]\n",
      "df.each_row do |row|\n",
      "  chr_name = row[:name]\n",
      "  axis = row[:df].axis.to_a\n",
      "  2.times do |i|\n",
      "    num = axis.sample\n",
      "    from.push(chr_name + '.' + num.to_s)\n",
      "    num = axis.sample\n",
      "    to.push(chr_name + '.' + num.to_s)\n",
      "  end\n",
      "end\n",
      "connector_df = Nyaplot::DataFrame.new({from: from.shuffle,to: to.shuffle})\n",
      "connector_df"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
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     "cell_type": "code",
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      "plot2.add_connector_with_df(connector_df, :from, :to)\n",
      "plot2.show"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
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