trendSceek
Compute spatial variable genes with trendsceek method
trendSceek(
gobject,
expression_values = c("normalized", "raw"),
subset_genes = NULL,
nrand = 100,
ncores = 8,
...
)| Argument | Description |
|---|---|
gobject |
Giotto object |
expression_values |
gene expression values to use |
subset_genes |
subset of genes to run trendsceek on |
nrand |
An integer specifying the number of random resamplings of the mark distribution as to create the null-distribution. |
ncores |
An integer specifying the number of cores to be used by BiocParallel |
list() |
Additional parameters to the trendsceek_test#trendsceektest function |
This function is a wrapper for the trendsceek_test method implemented in the trendsceek package
data.frame with trendsceek spatial genes results