The problem for installing

[noahsark1117]

I try to install text2vec on rstudio-server, but it shows error massage:

Installing package into ‘/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
URL’https://cran.rstudio.com/src/contrib/text2vec_0.4.0.tar.gz'
Content type 'application/x-gzip' length 3433916 bytes (3.3 MB)
downloaded 3.3 MB

• installing source package ‘text2vec’ ...
  ** libs
  g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/local/include -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/RcppParallel/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/digest/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c GloveFitter.cpp -o GloveFitter.o
  g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/local/include -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/RcppParallel/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/digest/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c HashCorpus.cpp -o HashCorpus.o
  In file included from Corpus.h:17,
  from HashCorpus.h:17,
  from HashCorpus.cpp:17:
  SparseTripletMatrix.h: In member function ‘SEXPREC* SparseTripletMatrix::get_sparse_triplet_matrix(Rcpp::CharacterVector&, Rcpp::CharacterVector&)’:
  SparseTripletMatrix.h:102: ERROR：expected initializer before ‘:’ token
  SparseTripletMatrix.h:111: ERROR：expected ‘)’ before ‘;’ token
  In file included from HashCorpus.cpp:17:
  HashCorpus.h: In member function ‘void HashCorpus::insert_terms(std::vector<std::basic_string<char, std::char_traits, std::allocator >, std::allocator<std::basic_string<char, std::char_traits, std::allocator > > >&, int)’:
  HashCorpus.h:120: ERROR：expected initializer before ‘:’ token
  HashCorpus.cpp:33: ERROR：expected primary-expression at end of input
  HashCorpus.cpp:33: ERROR：expected ‘;’ at end of input
  HashCorpus.cpp:33: ERROR：expected primary-expression at end of input
  HashCorpus.cpp:33: ERROR：expected ‘)’ at end of input
  HashCorpus.cpp:33: ERROR：expected statement at end of input
  HashCorpus.cpp:33: ERROR：expected ‘}’ at end of input
  In file included from Corpus.h:17,
  from HashCorpus.h:17,
  from HashCorpus.cpp:17:
  SparseTripletMatrix.h: In member function ‘SEXPREC* SparseTripletMatrix::get_sparse_triplet_matrix(Rcpp::CharacterVector&, Rcpp::CharacterVector&) [with T = float]’:
  HashCorpus.h:76: instantiated from here
  SparseTripletMatrix.h: In member function ‘SEXPREC* SparseTripletMatrix::get_sparse_triplet_matrix(Rcpp::CharacterVector&, Rcpp::CharacterVector&) [with T = int]’:
  HashCorpus.h:81: instantiated from here
  make: *** [HashCorpus.o] ERROR 1
  ERROR: compilation failed for package ‘text2vec’
• removing ‘/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/text2vec’
  Warning in install.packages :
  installation of package ‘text2vec’ had non-zero exit status

[dselivanov]

Please provide sessionInfo and g++ version. I suspect g++ is too old and doesn't have c++11 support.

[noahsark1117]

Thank you for your help!
I check the g++ version and find that is too old. Then I update g++ to 7.1.0
$g++ --version
gcc (GCC) 7.1.0
Copyright © 2017 Free Software Foundation, Inc.

And my R information is:

sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS release 6.7 (Final)

locale:
[1] LC_CTYPE=zh_CN.UTF-8 LC_NUMERIC=C LC_TIME=zh_CN.UTF-8 LC_COLLATE=zh_CN.UTF-8
[5] LC_MONETARY=zh_CN.UTF-8 LC_MESSAGES=zh_CN.UTF-8 LC_PAPER=zh_CN.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] tools_3.3.2

After update the g++ version, text2vec package also can't be installed, the new problems appear.

• installing source package ‘text2vec’ ...
  ** libs
  g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/local/include -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/RcppParallel/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/digest/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c GloveFitter.cpp -o GloveFitter.o
  In file included from /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp/Module.h:338:0,
  from /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp.h:64,
  from text2vec.h:17,
  from GloveFit.h:17,
  from GloveFitter.cpp:17:
  /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp/module/Module_Property.h:103:41: WARN：dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  void set(Class* object, SEXP value) throw(std::range_error,Rcpp::not_compatible){
  ^~~~~
  /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp/module/Module_Property.h:161:41: WARN：dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  void set(Class* object, SEXP value) throw(std::range_error,Rcpp::not_compatible){
  g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/local/include -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/RcppParallel/include" -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/digest/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c HashCorpus.cpp -o HashCorpus.o
  In file included from /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp/Module.h:338:0,
  from /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp.h:64,
  from SparseTripletMatrix.h:17,
  from Corpus.h:17,
  from HashCorpus.h:17,
  from HashCorpus.cpp:17:
  /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp/module/Module_Property.h:103:41: WARN：dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  void set(Class* object, SEXP value) throw(std::range_error,Rcpp::not_compatible){
  ^~~~~
  /home/rstudio/R/x86_64-redhat-linux-gnu-library/3.3/Rcpp/include/Rcpp/module/Module_Property.h:161:41: WARN：dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  void set(Class* object, SEXP value) throw(std::range_error,Rcpp::not_compatible){
  ^~~~~
  In file included from Corpus.h:17:0,
  from HashCorpus.h:17,
  from HashCorpus.cpp:17:
  SparseTripletMatrix.h: In Function ‘HashCorpus::HashCorpus(uint32_t, uint32_t, uint32_t, uint32_t, int)’:
  SparseTripletMatrix.h:53:7: WARN：‘.SparseTripletMatrix::nnz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  class SparseTripletMatrix {
  ^~~~~~~~~~~~~~~~~~~
  SparseTripletMatrix.h:53:7: WARN：‘.SparseTripletMatrix::nnz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  class SparseTripletMatrix {
  ^~~~~~~~~~~~~~~~~~~
  .......
  ** building package indices
  ** installing vignettes
  ** testing if installed package can be loaded
  sh: line 1: 17637 ERROR
  (core dumped) '/usr/lib64/R/bin/R' --no-save --slave 2>&1 < '/tmp/RtmptWnhbU/file449c7deb48a7'

most of WARNING is 'dynamic exception specifications are deprecated in C++11 [-Wdeprecated]'

Hope your help. Thanks

[noahsark1117]

The problem has been solved! After I installed 'Rcpp11' package in R, the 'text2vec' package can be installed.
Thank you for your help, dselivanov.

[amgmails]

Hi everyone, I am a young ivorian statistician having just discovered your R package. I have a problem to install text2vec. I am using an XPS 15 with ubuntu 16.04 LTS with Microsoft Revolution Open 3.3.3 installed. My problem is that i get an error when I try to install the "text2vec" R package on my machine. The error message i get is below :

`* installing source package ‘text2vec’ ...
** package ‘text2vec’ successfully unpacked and MD5 sums checked
** libs
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c GloveFitter.cpp -o GloveFitter.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'GloveFitter.o' failed
make: [GloveFitter.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c HashCorpus.cpp -o HashCorpus.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'HashCorpus.o' failed
make: [HashCorpus.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c LDA_gibbs.cpp -o LDA_gibbs.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'LDA_gibbs.o' failed
make: [LDA_gibbs.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c RcppExports.cpp -o RcppExports.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'RcppExports.o' failed
make: [RcppExports.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c VocabCorpus.cpp -o VocabCorpus.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'VocabCorpus.o' failed
make: [VocabCorpus.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c Vocabulary.cpp -o Vocabulary.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'Vocabulary.o' failed
make: [Vocabulary.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c matrix_utils.cpp -o matrix_utils.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'matrix_utils.o' failed
make: [matrix_utils.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c uint_hash.cpp -o uint_hash.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'uint_hash.o' failed
make: [uint_hash.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -DU_STATIC_IMPLEMENTATION -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/RcppParallel/include" -I"/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/digest/include" -c utils.cpp -o utils.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'utils.o' failed
make: [utils.o] Error 127 (ignored)
-shared -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -o text2vec.so GloveFitter.o HashCorpus.o LDA_gibbs.o RcppExports.o VocabCorpus.o Vocabulary.o matrix_utils.o uint_hash.o utils.o -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -lR
sh: line 2: -shared: command not found
/usr/lib64/microsoft-r/3.3/lib64/R/share/make/shlib.mk:6: recipe for target 'text2vec.so' failed
make: *** [text2vec.so] Error 127
ERROR: compilation failed for package ‘text2vec’

• removing ‘/home/maixent/R/x86_64-pc-linux-gnu-library/3.3/text2vec’
  Warning in install.packages :
  installation of package ‘text2vec’ had non-zero exit status`.

This one is the result of a sessionInfo() :
`R version 3.3.3 (2017-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS

locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=fr_FR.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=en_GB.UTF-8 LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] RevoUtilsMath_10.0.0

loaded via a namespace (and not attached):
[1] RevoUtils_10.0.3 tools_3.3.3 `

Thanks in advance for your help.

[dselivanov]

Hi @amgmails . Seems like MRO doesn't support modern c++ compiler with c++11 support (after googling I found many similar issues like here and there ). I suggest you to try GNU R instead of MRO.

[dselivanov]

@noahsark1117 Seems like not Rcpp11 helped, but reinstallation of Rcpp itself.