loading issue

[Kiliankleemann]

Hey, not sure how to approach this:

working on macbook Air M1

is:issue is:open Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so': dlopen(/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so, 0x0006): tried: '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so' (no such file), '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')) Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted ERROR: lazy loading failed for package ‘xCell’ * removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/xCell’ Error: Failed to install 'unknown package' from GitHub: Failed to install 'unknown package' from GitHub: HTTP error 403. API rate limit exceeded for 131.220.35.155. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.) Rate limit remaining: 0/60 Rate limit reset at: 2023-12-14 17:48:22 UTC To increase your GitHub API rate limit - Use usethis::create_github_token() to create a Personal Access Token. - Use usethis::edit_r_environ() and add the token as GITHUB_PAT. In addition: Warning message: In i.p(...) : installation of package ‘/var/folders/p1/w5vpt8z97n3f8xvc8kzc87nc0000gn/T//RtmpopGCKu/file14ab5789b1780/xCell_1.1.0.tar.gz’ had non-zero exit status

[dviraran]

It doesn't seem like an xCell issue. Try restarting Rstudio or even restarting your computer.

[Kiliankleemann]

Not sure why installation fails. I had immunodeconv installed before.

Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so, 0x0006): tried: '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so' (no such file), '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/HDF5Array/libs/HDF5Array.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64'))
Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘xCell’

• removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/xCell’

[dviraran]

xCell doesn't use HDF5Array. This is not an xCell issue. I guess its an immunodeconv dependecy issue. Usually restarting R solves those kind of issues.

[Kiliankleemann]

Restart does not work. I guess its an immunodeconv dependecy issue Yes it is. Not sure what to do.