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2. what if no unpaired files after trimmomatic or after bowtie2 in the preparation step
--> error, discontinued
3. mhlen for centrifuge: only need it for assembled fasta, should be 100 or higher
## Eukfinder_long:
1. test for PacBio and Nanopore datasets
2. cov, if 10% or 20%, maybe too long for the superlong reads. better to set 2 threshold (one for length, ie, 200bp or 1000 bp, the other for % of length) and then choose one
Note:
--mhlen in both Eukfinder_short and Eukfinder_long