index.rst

Table of Contents

• RAxML 8.2.9
  • Dependencies
  • Installation
  • Module
  • Usage mode
  • References
  • Author

RAxML 8.2.9

• Installation date: 07/02/2017
• URL: http://sco.h-its.org/exelixis/web/software/raxml/
• Apolo version: Apolo II
• License: GNU GENERAL PUBLIC LICENSE Version 3

Dependencies

-Intel Parallel Studio XE 2017 Update 1 (Intel C Compiler and Intel MPI)

Installation

1. First download the tar from the main page

wget https://github.com/stamatak/standard-RAxML/archive/v8.2.9.tar.gz
tar -zxvf v8.2.9.tar.gz

1. compilation config and editing the makefile

cd standard-RAxML-8.2.9
module load impi/2017_update-1
cp Makefile.AVX2.HYBRID.gcc Makefile.AVX2.HYBRID.icc
emacs Makefile.AVX2.HYBRID.icc (Cambiar CC = mpicc por CC = mpiicc)
make -f Makefile.AVX2.HYBRID.icc 2>&1 | tee raxml-make.log

Module

#%Module1.0#####################################################################
##
## module raxml/8.2.9_intel_impi-2017_update-1
##
## /share/apps/modules/raxml/8.2.9_intel_impi-2017_update-1     Written by Mateo Gomez-Zuluaga
##

proc ModulesHelp { } {
    puts stderr "\traxml/8.2.9_intel-2017_update-1 - sets the Environment for Raxml in \
    \n\tthe share directory /share/apps/raxml/8.2.9/intel_impi/2017_update-1\n"
}

module-whatis "\n\n\tSets the environment for using Raxml 8.2.9 \
               \n\tbuilded with Intel Parallel Studio XE 2017\n"

# for Tcl script use only
set       topdir     /share/apps/raxml/8.2.9/intel_impi/2017_update-1
set       version    8.2.9
set       sys        x86_64-redhat-linux

module load impi/2017_update-1

prepend-path PATH    $topdir/bin

Usage mode

module load raxml/8.2.9_intel_impi-2017_update-1

References

• manual
• http://sco.h-its.org/exelixis/web/software/raxml/cluster.html
• http://sco.h-its.org/exelixis/resource/doc/Phylo100225.pdf

Author

• Mateo Gómez Zuluaga