SearchGUI-3.3.3-Java-1.8.0_152.eb

easyblock = 'PackedBinary'

name = 'SearchGUI'
version = '3.3.3'
versionsuffix = '-Java-%(javaver)s'

homepage = 'https://github.com/compomics/searchgui'
description = """SearchGUI is a user-friendly open-source graphical user interface for configuring and
 running proteomics identification search engines and de novo sequencing algorithms,
 currently supporting X! Tandem, MS-GF+, MS Amanda, MyriMatch, Comet, Tide, Andromeda, OMSSA,
 Novor and DirecTag."""

toolchain = SYSTEM

source_urls = ['http://genesis.ugent.be/maven2/eu/isas/searchgui/SearchGUI/%(version)s/']
sources = ['SearchGUI-%(version)s-mac_and_linux.tar.gz']
checksums = ['4589cf8582b4a56f6cddc79ff3bf6601067899046178834141288e3a79897f5b']

dependencies = [
    ('Java', '1.8.0_152'),
    ('Mono', '4.6.2.7')
]

sanity_check_paths = {
    'files': ['SearchGUI-%(version)s.jar'],
    'dirs': ['lib', 'resources'],
}

# aliases for CLI; see https://compomics.github.io/projects/searchgui/wiki/searchcli.html
modaliases = {
    'SearchCLI': 'java -cp $EBROOTSEARCHGUI/SearchGUI-%(version)s.jar eu.isas.searchgui.cmd.SearchCLI',
    'PathSettingsCLI': 'java -cp $EBROOTSEARCHGUI/SearchGUI-%(version)s.jar eu.isas.searchgui.cmd.PathSettingsCLI',
    'FastaCLI': 'java -cp $EBROOTSEARCHGUI/SearchGUI-%(version)s.jar eu.isas.searchgui.cmd.FastaCLI',
    'IdentificationParametersCLI':
    'java -cp $EBROOTSEARCHGUI/SearchGUI-%(version)s.jar eu.isas.searchgui.cmd.IdentificationParametersCLI'
}

moduleclass = 'bio'