test-and-release.yml

# (C) Copyright 2021 ECMWF.
#
# This software is licensed under the terms of the Apache Licence Version 2.0
# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
# In applying this licence, ECMWF does not waive the privileges and immunities
# granted to it by virtue of its status as an intergovernmental organisation
# nor does it submit to any jurisdiction.
#

name: Tests and release

on:
  workflow_dispatch: {}

  # schedule:
  #   # Every day at 3:07am
  #   # on the "default" branch set in github (currently is develop)
  #   - cron:  '07 3 * * *'

  release:
    types: [created]

  push:
    branches:
      - "*"

  repository_dispatch:
    types:
    - cdsapi-updated
    - magics-python-updated
    - ecmwf-api-client-updated

jobs:
  quality:
    name: Code QA
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    - run: pip install black flake8 isort
    - run: black --version
    - run: isort --version
    - run: flake8 --version
    - run: isort --check .
    - run: black --check .
    - run: flake8 .

  # test_build_doc:
  #   name: Test building documentation
  #   runs-on: ubuntu-latest
  #   steps:
  #   - uses: actions/checkout@v3

  #   - name: Install packages needed to build the documentation
  #     run: |
  #       pip install sphinx
  #       pip install -r docs/requirements.txt
  #       sudo apt-get install pandoc
  #       pip freeze

  #   - name: Documentation
  #     run: |
  #       make clean
  #       make html
  #       # make linkcheck (don't run yet)
  #     working-directory: docs

  download-test-data:
    name: Download test data
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Tokens
      shell: python
      env:
        ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
        CDSAPIRC: ${{ secrets.CDSAPIRC }}

      run: |
        import os
        # for n in ('ECMWFAPIRC', 'CDSAPIRC'):
        n = 'ECMWFAPIRC'
        m = os.path.expanduser("~/." + n.lower())
        if os.environ[n]:
            with open(m, "w") as f:
                print(os.environ[n], file=f)
    - run: mkdir test-data
    - run: echo "dataA" > test-data/dataA.txt
    - run: echo "dataB" > test-data/dataB.txt
    - run: cat test-data/dataA.txt
    - name: Tar files
      run: tar -cvf test-data.tar test-data
    - name: Upload Artifact
      uses: actions/upload-artifact@v3
      with:
        name: test-data
        path: test-data.tar

  tests-with-external-download:
    if: github.event_name == 'release' && github.event.action == 'created'
    strategy:
      fail-fast: true
      matrix:
        platform: ["ubuntu-latest", "macos-latest", "windows-latest"]
        python-version: ["3.10"]
    name: Long tests with external downloads Python ${{ matrix.python-version }} ${{ matrix.platform }}
    runs-on: ${{ matrix.platform }}
    steps:
    - uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Tokens 
      shell: python
      env:
        ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
        CDSAPIRC: ${{ secrets.CDSAPIRC }}
      run: |
        import os
        # for n in ('ECMWFAPIRC', 'CDSAPIRC'):
        n = 'ECMWFAPIRC'
        m = os.path.expanduser("~/." + n.lower())
        if os.environ[n]:
            with open(m, "w") as f:
                print(os.environ[n], file=f)
    - name: Install climetlab
      run: pip install -e .  # run: pip install .[interactive,tensorflow,zarr]
    - run: climetlab versions
    - name: Install test tools
      run: |
        pip install pytest
        pip freeze
    - name: Long Tests
      run: pytest --durations=0 -E release -k 'not test_notebooks'

  tests-notebooks:
    if: github.event_name == 'release' && github.event.action == 'created'
    strategy:
      matrix:
        platform: ["ubuntu-latest"]
        python-version: ["3.9"]
    name: Tests notebooks Python ${{ matrix.python-version }} ${{ matrix.platform }}
    runs-on: ${{ matrix.platform }}
    steps:
    - uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Tokens 
      shell: python
      env:
        ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
        CDSAPIRC: ${{ secrets.CDSAPIRC }}
      run: |
        import os
        # for n in ('ECMWFAPIRC', 'CDSAPIRC'):
        n = 'ECMWFAPIRC'
        m = os.path.expanduser("~/." + n.lower())
        if os.environ[n]:
            with open(m, "w") as f:
                print(os.environ[n], file=f)
    - name: Install climetlab
      run: pip install -e .  # run: pip install .[interactive,tensorflow,zarr]
    - run: climetlab versions
    - name: Install test tools
      run: |
        pip install pytest
        pip freeze
    - name: Tests notebooks
      run: pytest tests/documentation/test_notebooks.py    

  short-tests:
    # if: (github.event_name == 'release' && github.event.action == 'created') || github.ref == 'refs/heads/main'
    # if: github.event_name == 'release' && github.event.action == 'created'
    # if: github.ref == 'refs/heads/main'
    needs: [download-test-data]
    strategy:
      matrix:
        platform: ["ubuntu-latest", "macos-latest", "windows-latest"]
        python-version: ["3.8", "3.9", "3.10"]
        # platform: ["ubuntu-latest"]
        # python-version: ["3.10"]
    name: Short tests Python ${{ matrix.python-version }} ${{ matrix.platform }}
    runs-on: ${{ matrix.platform }}
    steps:
    - uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Download test-data
      uses: actions/download-artifact@v3
      with:
        name: test-data
    - run: tar xvf test-data.tar
    - run: cat test-data/dataA.txt
    - name: Tokens 
      # (this should be removed when tests are refactored)
      shell: python
      env:
        ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
        CDSAPIRC: ${{ secrets.CDSAPIRC }}
      run: |
        import os
        # for n in ('ECMWFAPIRC', 'CDSAPIRC'):
        n = 'ECMWFAPIRC'
        m = os.path.expanduser("~/." + n.lower())
        if os.environ[n]:
            with open(m, "w") as f:
                print(os.environ[n], file=f)
    - name: Install climetlab
      run: pip install -e .
    - run: climetlab versions
    - name: Install test tools
      run: |
        pip install pytest
        pip freeze
    - name: Check imports
      run: |
        pytest tests/test_imports.py
      env:
        SKIP_TEST_IMPORTS: 0
    - name: Tests
      run: |
        # -E flag is defined in conftest.py
        # notebooks need more dependencies
        # pytest --durations=0 -E release -k 'not test_notebooks'
        pytest --durations=10 -vv -E short
   #  - name: Install climetlab full
   #    run: |
   #      pip install .[interactive,tensorflow,zarr]
   #      pip freeze
   #  - name: Tests with dependencies
   #    run: |
   #      pytest --durations=10 -vv -E short

  check-version-tag:
    if: github.event_name == 'release' && github.event.action == 'created'
    name: Check versions and tags
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: "3.8"
    - name: Check that tag version matches package version
      run: |
        tag=${GITHUB_REF#refs/tags/}
        version=$(python setup.py --version)
        echo 'tag='$tag
        echo "version file="$version
        test "$tag" == "$version"

  deploy:
    name: Upload to Pypi and release
    needs: [check-version-tag, short-tests, quality, tests-with-external-download, tests-notebooks]
    # needs: [check-version-tag, short-tests, quality, test_build_doc, tests-with-external-download, tests-notebooks]
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: "3.9"
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install setuptools wheel twine
    - name: Build pip package
      run: python setup.py sdist
    - name: Publish
      env:
        TWINE_USERNAME: __token__
        TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
      run: twine upload --verbose dist/*