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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(analysis_deps_anova)
export(analysis_deps_limma)
export(analysis_deps_sam)
export(check_mea_input)
export(compute_kses)
export(construct_pwm)
export(extract_psites_score)
export(fore_seq_to_motif)
export(formatted_output_mef_results)
export(generate_psites_score_file)
export(get_aligned_seq_for_mea)
export(get_colors_for_discrete_value)
export(get_combined_data_frame)
export(get_df_with_AAs_i)
export(get_file_info_from_dir)
export(get_file_suffix)
export(get_filtered_df)
export(get_foreground_df_to_motifs)
export(get_foreground_seq_to_motifs)
export(get_global_background_df)
export(get_ka_by_mean_or_mlr)
export(get_ksea_regulons_info)
export(get_ksea_result_list)
export(get_kses)
export(get_list_with_filtered_sites)
export(get_merged_phospho_df)
export(get_modification_index)
export(get_motif_analysis_summary)
export(get_motifs_list)
export(get_normalized_data_FOT5)
export(get_normalized_data_of_psites)
export(get_substrate_expr_df)
export(get_summary_from_ksea)
export(get_summary_with_unique_sites)
export(get_unique_AAs_i_df)
export(keep_psites_with_max_in_topX)
export(load_data_with_ftp)
export(load_data_with_http)
export(mea_based_on_background)
export(merge_profiling_file_from_Firmiana)
export(motif_data_frame_to_sequence)
export(norm_based_on_proteomics_maxquant)
export(norm_maxquant)
export(normalize_nopair_ctrl_by_col)
export(normalize_nopair_noctrl_by_colmed)
export(normalize_phos_data_to_profiling)
export(normalize_to_Pair)
export(plot_seqlogo)
export(pre_process_filter_psites)
export(qc_maxquant)
export(seach_motif_pattern)
export(visualization_deps_with_scatter)
export(visualization_fuzzycluster)
export(visualization_with_simple_pca)
export(visualization_with_simple_tsne)
export(visualization_with_umap)
export(write_csv_pep_seq_conf)
import(RCurl)
import(graphics)
import(stats)
import(stringr)
import(utils)
import(uwot)