/
disease_progression_yarrrml_template.yaml
123 lines (123 loc) · 4.39 KB
/
disease_progression_yarrrml_template.yaml
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---
prefixes:
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs: http://www.w3.org/2000/01/rdf-schema#
ex: https://ejp-rd.eu/ids/
obo: http://purl.obolibrary.org/obo/
sio: http://semanticscience.org/resource/
vocab: https://ejp-rd.eu/vocab/
pico: https://data.cochrane.org/ontologies/pico/
ndfrt: http://purl.bioontology.org/ontology/NDFRT/
edam: http://purl.bioontology.org/ontology/EDAM/
ordo: http://www.orpha.net/ORDO/
this: "|||BASE|||"
sources:
cde_patient_disease_progression-source:
access: "|||DATA|||"
referenceFormulation: "|||FORMULATION|||"
iterator: "$"
mappings:
identifier_has_value_for_thisPerson_longitudinal_information_gathering_role:
sources:
- cde_patient_disease_progression-source
s: this:individual_thisPerson_$(pid)#ID
po:
- predicates: http://semanticscience.org/resource/has-value
objects:
value: "$(pid)"
datatype: xsd:string
identifier_denotes_role_longitudinal_information_gathering_role:
sources:
- cde_patient_disease_progression-source
s: this:individual_thisPerson_$(pid)#ID
po:
- predicates: a
objects:
value: http://semanticscience.org/resource/identifier
type: iri
- predicates: a
objects:
value: http://semanticscience.org/resource/identifier
type: iri
- predicates: http://semanticscience.org/resource/denotes
objects:
value: this:individual_thisPerson_$(pid)_$(uniqid)#longitudinal_information_gathering_role
type: iri
entity_has_role_longitudinal_information_gathering_role:
sources:
- cde_patient_disease_progression-source
s: this:individual_thisPerson_$(pid)#Entity
po:
- predicates: a
objects:
value: http://semanticscience.org/resource/person
type: iri
- predicates: a
objects:
value: http://semanticscience.org/resource/object
type: iri
- predicates: http://semanticscience.org/resource/has-role
objects:
value: this:individual_thisPerson_$(pid)_$(uniqid)#longitudinal_information_gathering_role
type: iri
longitudinal_information_gathering_role_annotation:
sources:
- cde_patient_disease_progression-source
s: this:individual_thisPerson_$(pid)_$(uniqid)#longitudinal_information_gathering_role
po:
- predicates: a
objects:
value: http://purl.obolibrary.org/obo/OBI_0000093
type: iri
- predicates: a
objects:
value: http://semanticscience.org/resource/role
type: iri
- predicates: rdfs:label
objects:
value: " Role: Patient for longitudinal information gathering"
datatype: xsd:string
longitudinal_information_gathering_role_realized_longitudinal_information_gathering_process_diseaseX:
sources:
- cde_patient_disease_progression-source
s: this:individual_$(pid)_$(uniqid)#longitudinal_information_gathering_role
po:
- predicates: http://semanticscience.org/resource/is-realized-in
objects:
value: this:individual_$(pid)_process#process_longitudinal_information_gathering_process_diseaseX
type: iri
process_longitudinal_information_gathering_process_diseaseX_process_annotation:
sources:
- cde_patient_disease_progression-source
s: this:individual_$(pid)_process#process_longitudinal_information_gathering_process_diseaseX
po:
- predicates: rdf:type
objects:
value: http://semanticscience.org/resource/process
type: iri
- predicates: rdf:type
objects:
value: http://semanticscience.org/resource/SIO_001052
type: iri
- predicates: rdfs:label
objects:
value: 'Process: patient longitudinal data collection'
datatype: xsd:string
1638258498756443_process_custom_annotation:
sources:
- cde_patient_disease_progression-source
s: this:individual_$(pid)_$(uniqid)_process#process_longitudinal_information_gathering_process_diseaseX
po:
- predicates: sio:refers-to
objects:
value: http://purl.obolibrary.org/obo/NCIT_C17747
type: iri
1638258498756476_process_custom_annotation:
sources:
- cde_patient_disease_progression-source
s: this:individual_$(pid)_$(uniqid)_process#process_longitudinal_information_gathering_process_diseaseX
po:
- predicates: rdfs:label
objects:
value: Longitudinal record of patient disease progression and events
datatype: xsd:string