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whyr.html
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<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<title>Clean up your data screening process with reporteR</title>
<meta charset="utf-8" />
<meta name="author" content="Anne Helby Petersen and Claus Thorn Ekstrøm UCPH Biostatistics" />
<script src="libs/header-attrs/header-attrs.js"></script>
<link href="libs/remark-css/default.css" rel="stylesheet" />
<link href="libs/remark-css/hygge.css" rel="stylesheet" />
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<link rel="stylesheet" href="ku.css" type="text/css" />
</head>
<body>
<textarea id="source">
class: center, middle, inverse, title-slide
# Clean up your data screening process with reporteR
### Anne Helby Petersen and Claus Thorn Ekstrøm<br>UCPH Biostatistics
### December 3rd, 2020
---
class: animated, fadeIn
layout: true
---
background-image: url(pics/title.png)
background-size: 100%
---
background-image: url(pics/manbeer.jpg)
background-size: 100%
class: middle, center
# The RESCueH project
---
class: center
# Timeline follow back
```
## day1 day2 day3
## 1 6 NA NA
## 2 8 NA 99
## 3 4 15 40
## 4 10 5 15
```
---
class: center
# Timeline follow back
```
## day1 day2 day3
## 1 6 NA NA
## 2 8 NA 99
## 3 4 15 40
## 4 10 5 15
## 5 3 19 24
## 6 25 88 20
```
---
class: center
# Monthly Alcohol units
<!-- -->
---
background-image: url(pics/flower.png)
background-size: 60%
class: center, middle
---
# Design idea for dataReporter
* Aid researchers in identifying problems that we didn't consider.
* Ensure that everything you checked (and **didn't check**) is documented.
* Enable **collaborations** with non-statisticians.
* Encourage reproducible research
dataReporter is **not**
* a cleaner
* a formal rule validator
Documentation to be **read** and **assessed** by a human.
---
.footnote[
# Data on US presidents
```r
head(dataReporter::presidentData, 5)
```
```
## lastName firstName orderOfPresidency birthday stateOfBirth
## 1 Washington George 1 1732-02-22 Virginia
## 2 Adams John 2 1735-10-30 Massachusetts
## 3 Jefferson Thomas 3 1743-04-13 Virginia
## 4 Madison James 4 1751-03-16 Virginia
## 5 Monroe James 5 1758-04-28 Virginia
## assassinationAttempt sex ethnicity presidencyYears ageAtInauguration
## 1 0 Male Caucasian 7 57
## 2 0 Male Caucasian 3 61
## 3 0 Male Caucasian 8 57
## 4 0 Male Caucasian 8 57
## 5 0 Male Caucasian 8 58
## favoriteNumber
## 1 3+0.000000i
## 2 4+0.000000i
## 3 0+1.414214i
## 4 10+0.000000i
## 5 3+0.000000i
```
]
---
# Let's see it in action
```r
# Install package
devtools::install_github("ekstroem/dataReporter")
# Get example data
data(presidentData)
# Main function
makeDataReport(presidentData) # Produces report
# When data is screened and "clear" for use
makeCodebook(presidentData) # Produces condensed codebook
```
---
background-image: url(pics/dr-1.png)
background-size: 80%
---
background-image: url(pics/dr-2.png)
background-size: 90%
---
background-image: url(pics/dr-3.png)
background-size: 85%
---
background-image: url(pics/dr-5.png)
background-size: 100%
---
background-image: url(pics/dr-4.png)
background-size: 100%
---
background-image: url(pics/dr-6.png)
background-size: 82%
.caption-right-vertical[makeCodebook() result]
</textarea>
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