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This is intentional so that shards can be closed; see #10680 and #11248 for details and #12298 is the pull request that ultimately closed that issue. If Elasticsearch is not shutting down, there is something else going on, but the sleep is not the issue. That's just waiting before issuing sending a SIGKILL in case Elasticsearch really is dead but we don't want to signal prematurely.
elasticsearch wasn't restarting correctly. I investigated and found:
Line 129 of /etc/init.d/elasticsearch appears to be the culprit.
This machine is running RHEL 6.4.
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