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Ran this suite with the same seed multiple time on linux / mac without reproducing it, so this lead me to believe that we effectively have a rogue agent/pipeline running.
I took some time to investigate it, this is a symptom of another problem, I am pretty sure we have a periodic poller in the background started by the agent and doing some work and because of timing it can make this mock fails.
Refactoring the agent with #6455 will make sure the poller/webserver are only started when really needed. but we also need to make sure that correctly shutdown the classes.
Got this intermittent failure on my PR Travis tests.
https://travis-ci.org/elastic/logstash/jobs/192806190
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