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References

Choi2012

Choi, M., Shi, J., Jung, S. H., Chen, X., and Cho, K. H. Cho "Attractor landscape analysis reveals feedback loops in the p53 network that control the cellular response to DNA damage," Sci. Signal., vol. 5, no. 251, p. ra83 (2012) doi:`10.1126/scisignal.2003363 <https://dx.doi.org/10.1126/scisignal.2003363>`_.

Davidich2008

Davidich, M. I., and Bornholdt, S. "Boolean network model predicts cell cycle sequence of fission yeast," PLoS One 3, vol. 3, no. 2, p. e1672 (2008) doi:`10.1371/journal.pone.0001672 <https://dx.doi.org/10.1371/journal.pone.0001672>`_.

Giacomantonio2010

Giacomantonio, C. E., and Goodhill, G. J. "A Boolean model of the gene regulatory network underlying Mammalian cortical area development," PLoS Comput. Biol. vol. 6, no. 9 (2010) doi:`10.1371/journal.pcbi.1000936 <https://dx.doi.org/10.1371/journal.pcbi.1000936>`_.

Huang2013

Huang, X., Chen, L., Chim, H., Chan, L. L. H., Zhao, Z., and Yan, H. "Boolean genetic network model for the control of C. elegans early embryonic cell cycles," Biomed. Eng. Online, vol. 12 Suppl 1, p. S1, (2013) doi:`10.1186/1475-925X-12-S1-S1 <https://dx.doi.org/10.1186/1475-925X-12-S1-S1>`_.

Krawitz2007

Krawitz, P. and Shmulevich, I. "Basin Entropy in Boolean Network Ensembles" Phys. Rev. Lett., vol. 98, 158701 (2007) doi:`10.1103/PhysRevLett.98.158701 <https://dx.doi.org/10.1103/PhysRevLett.98.158701>`_.

Krumsiek2011

Krumsiek, J., Marr, C., Schroeder, T., and Theis, F. J. "Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network," PLoS One, vol. 6, no. 8, p. e22649, (2011) doi:`10.1371/journal.pone.0022649 <https://dx.doi.org/10.1371/journal.pone.0022649>`_.

Li2004

Li, F., Long, T., Lu, Y., Ouyang, Q., and Tang, C. "The yeast cell-cycle network is robustly designed," Proc. Natl. Acad. Sci. U. S. A., vol. 101, no. 14, pp. 4781-4786 (2004) doi:`10.1073/pnas.0305937101 <https://dx.doi.org/10.1073/pnas.0305937101>`_.

Lizier2012

Lizier, J. T., Prokopenko, M., and Zomaya, A. Y., "Local measures of information storage in complex distributed computation" Information Sciences, vol. 208, pp. 39-54 (2012) doi:`10.1016/j.ins.2012.04.016 <http://dx.doi.org/10.1016/j.ins.2012.04.016>`_.

Pomerance2009

Pomerance, A., Ott, E., Girvan E., and Losert, W. "The Effect of Network Topology on the Stability of Discrete State Models of Genetic Control." Proc. Natl. Acad. Sci. USA 106 (2009): 8209-14. doi:`10.1073/pnas.0900142106 <https://dx.doi.org/10.1073/pnas.0900142106>`_.

Ryll2011

Ryll, A., Samaga, R., Schaper, F., Alexopoulos, L. G., Klamt, S. "Large-scale network models of IL-1 and IL-6 signalling and their hepatocellular specification," Mol. Biosyst., vol. 7, no. 12, pp. 3253-3270, (2011) doi:`10.1039/c1mb05261f <https://dx.doi.org/10.1039/c1mb05261f>`_.

Schreiber2000
  1. Schreiber, "Measuring information transfer", Phys. Rev. Lett vol. 85, no. 2, pp.461-464 (2000). doi:`10.1103/PhysRevLett.85.461 <http://dx.doi.org/10.1103/PhysRevLett.85.461>`_.
Shmulevich2004

Shmulevich, I., and Kauffman, S. A. "Activities and sensitivities in Boolean network models." Phys. Rev. Lett. 93, 48701 (2004) doi:`10.1103/PhysRevLett.93.048701 <https://dx.doi.org/10.1103/PhysRevLett.93.048701>`_.

Singh2012

Singh, A., Nascimento, J. M., Kowar, S., Busch, H., and Boerries, M. "Boolean approach to signalling pathway modelling in HGF-induced keratinocyte migration," Bioinformatics, vol. 28, no. 18, pp. i495-i501, (2012) doi:`10.1093/bioinformatics/bts410 <https://dx.doi.org/10.1093/bioinformatics/bts410>`_.