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Most of the implementation of grpc-elixir may be related with protobuf and there may lots of code to be changed. So you have to understand how grpc-elixir works if you want to add the flatbuffers support. But it's hard to explain the design in some few words, the code is the best way :). And you can refer the this doc https://grpc.io/docs/guides/wire.html. gRPC is just an HTTP/2 framework, you can use Protobuf or flatbuffers to marshal/unmarshal the data.
https://grpc.io/blog/flatbuffers
https://github.com/wooga/eflatbuffers exists
There needs to be some integration with grpc-elixir.
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