/
NAMESPACE
80 lines (79 loc) · 2.06 KB
/
NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(RunDESeq2,StudyCase)
S3method(RunViRf,StudyCase)
S3method(RunedgeR,StudyCase)
S3method(buildAttributes,DataTableWithClasses)
S3method(buildAttributes,DataTableWithTrainTestSets)
S3method(buildAttributes,default)
S3method(exportTables,DataTableWithClasses)
S3method(exportTables,DataTableWithTrainTestSets)
S3method(exportTables,StudyCase)
S3method(exportTables,default)
S3method(histCountsPerGeneClass,StudyCase)
S3method(plotFigures,DataTableWithClasses)
S3method(print,DataTableWithClasses)
S3method(print,DataTableWithTrainTestSets)
S3method(print,StudyCase)
S3method(print,TrainTestResult)
export(DEGordering)
export(DataTableWithClasses)
export(DataTableWithTrainTestSets)
export(ErrorRateBoxPlot)
export(ExtractPhenoTable)
export(IterateTrainingTesting)
export(LibsizeBarplot)
export(LibsizeRankPlot)
export(LoadRequiredBioconductorPackages)
export(LoadRequiredCRANPackages)
export(MergeRuns)
export(MisclassificationEstimate)
export(NormalizeSamples)
export(RunDESeq2)
export(RunViRf)
export(RunedgeR)
export(StratifiedSampling)
export(StudyCase)
export(SummarizeErrorTable)
export(SummarizeTrainTestResults)
export(TrainTestResult)
export(TuneClassifiers)
export(XYplot)
export(buildAttributes)
export(exportTables)
export(filterDataTable)
export(geocharFromPheno)
export(heatmap.TrainTestResult)
export(histCountsPerGeneClass)
export(initParallelComputing)
export(initRecountID)
export(loadCounts)
export(loadMemoryImage)
export(loadRecountExperiment)
export(message.with.time)
export(outputParameters)
export(plot2PCs)
export(plotFigures)
export(plotFilterHistograms)
export(plotKNNtuning)
export(plotRFtuning)
export(plotSVMtuning)
export(saveMemoryImage)
export(selectProjectsByCharacteristics)
export(summary.DataTableWithClasses)
export(summary.DataTableWithTrainTestSets)
export(summary.StudyCase)
export(summary.default)
import(MASS)
import(RCurl)
import(S4Vectors)
import(XML)
import(caret)
import(class)
import(doMC)
import(doParallel)
import(e1071)
import(foreach)
import(ggplot2)
import(lattice)
import(randomForest)
import(stats)