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gixsgui.m
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gixsgui.m
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function gixsgui
% ***********************************************
% Copyright (c) 2020 UChicago Argonne, LLC
% See LICENSE file.
% ***********************************************
%
% GIXSGUI Display and process GIXSDATA interactively in GIXSGUI.
% GIXSGUI is a straightfoward tool to display and process linecut on x-ray
% scattering data taken either in transmission or grazing-incidence
% geometry. Currently supported image types include TIF (TIFF), MAT, CBF,
% FITS, EDF.
%
% Operations in GIXSGUI can also be done in the command window or through
% a script by calling the methods defined in GIXSDATA class.
%
% See also GIXSDATA
% Zhang Jiang @8ID/APS/ANL
% $Revision: 1.0 $ $Date: 2011/01/18 $
% $Revision: 1.1 $ $Date: 2011/03/01 $
% (1)GUI for image statistics and plot histgram. See also changes in
% GIXSDATA. (ZJ)
% (2) Use default mask in default parameters (if exists) for new
% images. (ZJ)
% (3) Option export image to tif (int32) or mat files. Function
% IMWRITE2TIF needs to be called. (ZJ)
% (4) GUI flat field correction. See also changes in GIXSDATA. (ZJ
% and Joe Strzalka)
% (5) Enable batch mode to apply flat field and save image back to
% tif files. (ZJ)
% (6) Add efficienty correction. See also changes in GIXSDATA. (ZJ
% and JS)
% (7) Add GUI to selected data to plot (corrected or not). (ZJ)
% (8) Add reshape function to convert image axis to Cartesian
% coordinate. See also changes in GIXSDATA. (ZJ)
% (9) Add gap fill function. (ZJ and JS)
% (10) Add sumimg function to sum or average images. (ZJ)
% $Revision: 1.2.0 $ $Date: 2011/07/25 $
% (1) Redesign GUI layout. Move linecut and reshape tools to a
% separate GUI.
% (2) Split free cut to interactive cut and defined cut.
% (3) Remove 'Plot in single/separate' from free linecut.
% (4) Add overlay function to superimpose linecuts.
% (5) Allow mirror and rotation operations. (suggested by JS)
% $Revision: 1.2.1 $ $Date: 2011/08/31 $
% (1) Add pushbuttons for CLims.
% $Revision: 1.2.2 $ $Date: 2011/09/06 $
% (1) Add contour plot to Data Processing.
% $Revision: 1.3.0 $ $Date: 2011/09/16 $
% (1) Redesign Data Processing sub-figure layout using uitab.
% (2) Add peak finder.
% $Revision: 1.3.1 $ $Date: 2011/10/07 $
% (1) Add property PhiMode to GIXSDATA and its GUI.
% $Revision: 1.3.2 $ $Date: 2011/10/10 $
% (1) Add beam polarization corrections to GIXSDATA and
% their GUI.
% $Revision: 1.3.3 $ $Date: 2011/12/09 $
% (1) Modify mask tools to include or exclude regions.
% $Revision: 1.3.4 $ $Data: 2012/02/23 $
% (1) Add pushbutton for help.
% (2) Add remove_dummy_axis function.
% (3) Add PhiMode = 3 and 4 options to GIXSDATA and GIXSGUI
% $Revision: 1.3.5 $ $Data: 2012/07/17 $
% (1) Allow the number of points in the constrained linecut to be
% one.
% (2) Fix the problem of displaying Image Processing GUI out of the
% screen when main GUI is near the right edge of the current screen.
% New function check_figure_minitor is added to determine where to
% place the GUI figure.
% (3) Add the plot of data count for reshaped image.
% (4) Speed up reshaping image. See GIXSDATA for details.
% (5) Initialize GIXSGUI path using pwd during start.
% (6) Fix the problem of attempt to refer to the non-existing field
% udata.gdata.ImFileName when Remove button is clicked after a double
% click at the empty list box of the image space.
% (7) Display RawData in the datatip.
% (8) Fix export problems of using uiputfile when filname contains a
% non-extension-separation dot. Use filterindex to decide extension.
% (9) Use udata.path instead of pwd to export parameter and image.
% (10) Add option to display RawData. See GIXSDATA for changes.
% (11) Initialize/clear maps when exporting to parameter files.
% (12) Update maps each time when the image is loaded to avoid the
% possibility of mis-use of maps in the default parameter.
% $Revision: 1.4 $ $Data: 2012/08/15 $
% (1) Add GUI to calculate diffraction positions via DWBA theory.
% (2) Assign +/- sign to QrMap in GIXSDATA. Contour plot is still
% based on absolute values of QrMap.
% $Revision: 1.4.1 $ $Data: 2012/11/01 $
% (1) FITS image format is supported. $2012/11/01$
% $Revision: 1.5 $ $Data: 2013/1/27 $
% (1) Move gixsdatacursor function to a separate file for useage of
% GIXSDATA.
% (2) Add ChiMap (polar angle) to GIXSDATA.
% (3) Add roiscangui (calling roican.m)
% (4) Add an option to calculate all maps for LINECUT. See GIXSDATA
% for changes. $2013/02/20$
% (5) Add find center of mass (COM) pushbutton. $2013/02/27$
% (6) Add SDD calibration (using reflections). $2013/03/18$
% $Revision: 1.5.1 $ $Date: 2014/4/03 $
% (1) Use peak position for Get Specular
% $Revision: 1.5.2 $ $Date: 2014/6/11 $
% (1) Add support for .edf image format (from CHZ)
% $Revision: 1.6.0 $ $Date: 2014/10/28 $
% (1) Can pass linecut to Matlab Curve Fitting toolbox $2014/10/25$
% (2) Add SDD Calbiration GUI to use reflections from a surface to
% calibration $2014/10/27$
% (3) Update documention; add demostrations and script mode
% templates; reorganize files and folders; journal paper about
% GIXSGUI submitted.
% $Revision: 1.6.1 $ $Date: 2014/12/1 $
% (1) Add Lorentz correction
% (2) Add custome correction
% (3) Add boundary lines on the image for masked region via contour
% $Revision: 1.6.2 $ $Date: 2015/3/7 $
% (1) Resolve graphical compatibility issue in Matlab R2014b
% $Revision: 1.6.3 $ $Date: 2015/12/16 $
% (1) Add angle calibration.
% $Revision: 1.6.4 $ $Release Date: 2016/05/08 $
% (1) Include scaling in linecut overlay. $Date: 2016/03/26 $
% (2) Fix the bug of AND/OR on linecut constraints in both
% gixsdata.m $Date: 2016/04/19 $
% (3) Use pmedf_read.m by Petr Mikulik to read EDF files
% $Date: 2016/05/08 $
% (4) Able to displaly EDF header $Date: 2016/05/08 $
% $Revision: 1.6.5 $
% (1) See sumimggui.m for update details. $Date: 2016/06/20 $
% (2) Add NOFPIXELS for linecut function. $Date: 2016/08/01 $
% $Revision: 1.7 $
% (1) Add line fit for data analysis. $Date: 2016/10/17 $
% (2) Fix gixsdiffpos.m for correct exit angles. When qz (BA) is less
% than minimum that can be achieve for positive ext angles, the
% calculated exit angle should be negative. $Date: 2017/01/10 $
% $Revision: 1.7.1 $
% (1) Allow manual tick label. $Date: 2017/05/05 $
% $Revision: 1.7.2 $
% (1) Allow inpainting after image reshaping. $Date: 2017/11/09 $
% (2) Use cmask for contour plot in Contrained Image. $Date:
% 2017/11/28 $
% (3) Fix reflection conditions for space group 220, 228, and 230.
% $Date: 2018/01/24 $
% (4) Enable plotting diffraction of Born approximation. $Date:
% 2018/02/07 $
% $Revision: 1.7.3 $
% (1) Automatically add subfolder paths to Matlab. $Date: 2019/06/02 $
% (2) Enable Lambda and Eiger detectors. $Date: 2019/08/23 $
% (3) Read .imm file (8IDI at APS) with openmultiimm.m $Date:
% 2019/08/23 $
addpath(genpath(fileparts(which('gixsgui'))));
hFigGIXS = findall(0,'Tag','gixs_fig');
if ~isempty(hFigGIXS)
figure(hFigGIXS);
return;
end
%% main figure properites
figureSize = [750 755];
monitorPos = get(0,'MonitorPositions');
monitorPos = monitorPos(1,:);
figurePos = [10 monitorPos(4)-figureSize(2)-35 figureSize];
hFigGIXS = figure(...
'BackingStore','on',...
'Units','pixels',...
'Position',figurePos,...
'DockControls','off',...
'Resize','off',...
'PaperOrient','portrait',...
'PaperPositionMode','auto',...
'HandleVisibility','callback',...
'IntegerHandle','off',...
'NumberTitle','off',...
'MenuBar','none',...
'Toolbar','none',...
'CloseRequestFcn',@gixs_CloseRequestFcn,...
'Name','GIXSGUI - 1.7.3 (Developed at 8ID/APS/ANL)',...
'WindowStyle','normal',...
'Tag','gixs_fig','UserData',[]);
backgroundcolor = get(hFigGIXS,'color');
panelcolor = backgroundcolor;
hPanel1 = uipanel('Parent',hFigGIXS,...
'BackgroundColor',panelcolor,...
'units','norm',...
'Position',[0.005 0.05 0.41 0.95],...
'Title','Import & Export',...
'TitlePosition','centertop');
SizePanel1 = get(hPanel1,'position'); SizePanel1 = SizePanel1(3:4).*figureSize;
hPanel2 = uipanel('Parent',hFigGIXS,...
'BackgroundColor',panelcolor,...
'units','norm',...
'Position',[0.42 0.115 0.575 0.885],...
'Title','Image Space',...
'TitlePosition','centertop');
SizePanel2 = get(hPanel2,'position'); SizePanel2 = SizePanel2(3:4).*figureSize;
hPanel3 = uipanel('Parent',hFigGIXS,...
'BackgroundColor',panelcolor,...
'units','norm',...
'Position',[0.42 0.005 0.575 0.11],...
'Title','Misc Tools',...
'TitlePosition','centertop');
SizePanel3 = get(hPanel3,'position'); SizePanel3 = SizePanel3(3:4).*figureSize;
% --- panel 1 ---
uicontrol('Parent',hPanel1,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Load parameter file and image path',...
'TooltipString','Use buttons below to load parameter file and image path',...
'HorizontalAlignment','left',...
'Position',[5,SizePanel1(2)-35,SizePanel1(1)-12,15],...
'Tag','gixs_TextPath');
% load params
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Load Params ...',...
'Position',[5,SizePanel1(2)-60,95,20],...
'Tag','gixs_PushbuttonLoadParams',...
'TooltipString','Load .mat or .par (for gisaxsviewer MAR165) parameter file',...
'callback',@gixs_PushbuttonLoadParamsFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Set As Default',...
'Position',[105,SizePanel1(2)-60,95,20],...
'Tag','gixs_PushbuttonParamsDefault',...
'TooltipString','Set currently displayed parameters as default',...
'callback',@gixs_PushbuttonParamsDefaultFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Export Params ...',...
'Position',[205,SizePanel1(2)-60,95,20],...
'Tag','gixs_PushbuttonParamsExport',...
'TooltipString','Export currently displayed (not default) parameters to .mat file',...
'callback',@gixs_PushbuttonParamsExportFcn);
% load image path
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Load Path ...',...
'Position',[5,SizePanel1(2)-85,95,20],...
'Tag','gixs_PushbuttonLoadPath',...
'TooltipString','Load image path',...
'callback',@gixs_PushbuttonLoadPathFcn);
uicontrol('Parent',hPanel1,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Sort files by ',...
'HorizontalAlignment','right',...
'Position',[105,SizePanel1(2)-85,95,15]);
uicontrol('Parent',hPanel1,'Style','Popupmenu','unit','pixel',...
'Position',[205 SizePanel1(2)-85 95 20],...
'HorizontalAlignment','right',...
'backgroundcolor','w',...
'String',{'time','name'},...
'value',1,'Enable','on',...
'callback',@gixs_PopupmenuSortFcn,...
'Tag','gixs_PopupmenuSort');
uicontrol('Parent',hPanel1,'Style','listbox','Units','pixel',...
'Position',[1 250 SizePanel1(1)-4 SizePanel1(2)-340],...
'HorizontalAlignment','left','backgroundcolor','w',...
'Tooltipstring','Double click to add to image space',...
'Min',1,'Max',0,'String','','Enable','on','value',0,...
'Tag','gixs_ListboxPathFile',...
'callback',@gixs_ListboxPathFileFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','String','Refresh',...
'unit','pixel','Position',[80,225,70,20],...
'Tag','gixs_PushbuttonPathRefresh',...
'TooltipString','Refresh path',...
'callback',@gixs_PushbuttonRefreshFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Add',...
'Position',[155,225,70,20],...
'Tag','gixs_PushbuttonLoadImage',...
'TooltipString','Add to image space',...
'callback',@gixs_PushbuttonLoadImageFcn);
uicontrol('Parent',hPanel1,'Style','listbox','Units','pixel',...
'Position',[1 30 SizePanel1(1)-4 190],...
'HorizontalAlignment','left','backgroundcolor','w',...
'Min',1,'Max',0,'value',0,'String','','Enable','on',...
'Tooltipstring','Double click to plot or bring figure to front. Single click ''Ctrl''+click on figure frame to select curent image.',...
'Tag','gixs_ListboxImage',...
'callback',@gixs_ListboxImageFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Up','Position',[5,5,70,20],...
'Tag','gixs_PushbuttonImageUp',...
'Tooltipstring','Move selected image upward',...
'callback',@gixs_PushbuttonImageUpFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Down','Position',[80,5,70,20],...
'Tooltipstring','Move selected image downward',...
'Tag','gixs_PushbuttonImageDown',...
'callback',@gixs_PushbuttonImageDownFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Remove','Position',[155,5,70,20],...
'Tag','gixs_PushbuttonRemoveImage',...
'TooltipString','Remove selected image from image space. This does not delete the source image file.',...
'callback',@gixs_PushbuttonRemoveImageFcn);
uicontrol('Parent',hPanel1,'style','pushbutton','unit','pixel',...
'String','Remove All','Position',[230,5,70,20],...
'Tag','gixs_PushbuttonRemoveAllImage',...
'TooltipString','Remove all images from image space',...
'callback',@gixs_PushbuttonRemoveAllImageFcn);
% --- panel 2
% --- setup parameter
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','left',...
'String','Setup Parameters:',...
'Position',[5,SizePanel2(2)-35,100,15]);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Recalculate Map',...
'Position',[SizePanel2(1)-105*3,SizePanel2(2)-38,205,20],...
'Tag','gixs_PushbuttonRecaculate Map',...
'Tooltipstring','Recalculation is sometimes necessary when setup parameters are modifed in script mode rather than through GUI.',...
'callback',@gixs_PushbuttonGetQMapFcn);
% camera
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Select camera ',...
'Position',[SizePanel2(1)-105*4,SizePanel2(2)-60,100,15]);
uicontrol('Parent',hPanel2,'Style','Popupmenu','unit','pixel',...
'Position',[SizePanel2(1)-105*3 SizePanel2(2)-60 100 20],...
'HorizontalAlignment','right','backgroundcolor','w',...
'String',{'Pilatus','MAR165','Lambda (Si)','Eiger (Si)','Other'},...
'value',1,'Enable','on',...
'callback',@updateparamsFcn,...
'Tag','gixs_PopupmenuCamera');
% Pixel Size
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Pixel size ',...
'Position',[SizePanel2(1)-105*2,SizePanel2(2)-60,100,15]);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','center',...
'String','H',...
'Position',[SizePanel2(1)-100,SizePanel2(2)-40,40,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','0.172',...
'Position',[SizePanel2(1)-105, SizePanel2(2)-60,50,20],...
'Tag','gixs_EditPixelX',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','center',...
'String','V',...
'Position',[SizePanel2(1)-45,SizePanel2(2)-40,40,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','0.172',...
'Position',[SizePanel2(1)-55, SizePanel2(2)-60,50,20],...
'Tag','gixs_EditPixelY',...
'callback',@updateparamsFcn);
% Energy
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Energy (KeV) ',...
'Position',[SizePanel2(1)-105*4,SizePanel2(2)-85,100,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','10.86',...
'Position',[SizePanel2(1)-105*3 SizePanel2(2)-85 100 20],...
'Tag','gixs_EditEnergy',...
'callback',@updateparamsFcn);
% Dimension
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Image dimension ',...
'Position',[SizePanel2(1)-105*2,SizePanel2(2)-85,100,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left',...
'String','0',...
'Enable','inactive',...
'Position',[SizePanel2(1)-105, SizePanel2(2)-85,50,20],...
'Tag','gixs_EditDimX',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left',...
'String','0',...
'Enable','inactive',...
'Position',[SizePanel2(1)-55, SizePanel2(2)-85,50,20],...
'Tag','gixs_EditDimY',...
'callback',@updateparamsFcn);
% SDD
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','SDD (mm) ',...
'Tooltipstring','Sample-to-detector distance',...
'Position',[SizePanel2(1)-105*4,SizePanel2(2)-110,100,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','NaN',...
'Position',[SizePanel2(1)-105*3 SizePanel2(2)-110 100 20],...
'Tag','gixs_EditSDD',...
'callback',@updateparamsFcn);
% beam0
uicontrol('Parent',hPanel2,'style','Pushbutton','Units','pixel',...
'String','Beam0','HorizontalAlignment','right',...
'Tooltipstring','Show beam zero',...
'Position',[SizePanel2(1)-105*2,SizePanel2(2)-110,100,20],...
'tag','gixs_PushbuttonShowBeam0',...
'callback',@beam0specularlabelFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','NaN',...
'Position',[SizePanel2(1)-105, SizePanel2(2)-110,50,20],...
'Tag','gixs_EditBeam0X',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','NaN',...
'Position',[SizePanel2(1)-55, SizePanel2(2)-110,50,20],...
'Tag','gixs_EditBeam0Y',...
'callback',@updateparamsFcn);
% geometry
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Geometry ',...
'Position',[SizePanel2(1)-105*4,SizePanel2(2)-135,100,15]);
uicontrol('Parent',hPanel2,'Style','Popupmenu','unit','pixel',...
'Position',[SizePanel2(1)-105*3 SizePanel2(2)-135 100 20],...
'HorizontalAlignment','right','backgroundcolor','w',...
'String',{'Transmission','Reflection'},...
'value',2,'Enable','on',...
'Tag','gixs_PopupmenuGeometry',...
'callback',@updateparamsFcn);
% Specular
uicontrol('Parent',hPanel2,'style','Pushbutton','Units','pixel',...
'String','Specular',...
'HorizontalAlignment','right',...
'Tooltipstring','Show specular beam for reflection geometry',...
'Position',[SizePanel2(1)-105*2,SizePanel2(2)-135,100,20],...
'tag','gixs_PushbuttonShowSpecular',...
'callback',@beam0specularlabelFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','NaN',...
'Position',[SizePanel2(1)-105, SizePanel2(2)-135,50,20],...
'Tag','gixs_EditSpecularX',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','NaN',...
'Position',[SizePanel2(1)-55, SizePanel2(2)-135,50,20],...
'Tag','gixs_EditSpecularY',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Phi mode ',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*4,SizePanel2(2)-160,100,15]);
uicontrol('Parent',hPanel2,'Style','Popupmenu','unit','pixel',...
'Position',[SizePanel2(1)-105*3 SizePanel2(2)-160 100 20],...
'HorizontalAlignment','right','backgroundcolor','w',...
'String',{'(-180,180]','[0,360)','[-270,90)','[-90,270)'},...
'value',1,'Enable','on',...
'Tag','gixs_PopupmenuPhiMode',...
'callback',@updateparamsFcn);
% grazing angle
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Incident angle (deg) ',...
'Tooltipstring','For reflection only',...
'Position',[SizePanel2(1)-105*2,SizePanel2(2)-160,100,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','NaN',...
'Position',[SizePanel2(1)-105 SizePanel2(2)-160 100 20],...
'Tag','gixs_EditIncidentAngle',...
'callback',@updateparamsFcn);
% --- calibratio tools
PosCalib = [5,SizePanel2(2)-185,100,15];
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','left',...
'String','Setup Calibration:',...
'Position',PosCalib);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Get Beam0',...
'Position',[SizePanel2(1)-105*3,PosCalib(2),100,20],...
'Tag','gixs_PushbuttonGetBeam0',...
'TooltipString','Draw a rectangle to determine beam0 coordinate',...
'callback',@gixs_PushbuttonGetBeam0COMFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Get SDD',...
'Position',[SizePanel2(1)-105*2,PosCalib(2),100,20],...
'Tag','gixs_PushbuttonGetSDD',...
'TooltipString','Left click for at least 3 points on silver behenate (AgBE) (001) ring. If not exists, beam0 will be updated to circle center value. ''Backspace'' to remove previous point. ''Enter'' to finish.',...
'callback',@gixs_PushbuttonGetSDDFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Get Specular',...
'Position',[SizePanel2(1)-105,PosCalib(2),100,20],...
'Tag','gixs_PushbuttonGetSpecular',...
'TooltipString','Left click twice to draw a line across the diffuse rod to determine specular coordinate. ''Backspace'' to remove previous point. ''Enter'' to finish.',...
'callback',@gixs_PushbuttonGetSpecularFcn);
% --- image corrections
PosCorrection = [5,SizePanel2(2)-205,100,15];
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','left',...
'String','Image Corrections:',...
'Position',PosCorrection);
% efficiency
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Efficiency',...
'Position',[SizePanel2(1)-105*4,PosCorrection(2)-25,100,20],...
'Tag','gixs_PushbuttonEfficiency',...
'TooltipString','Show current efficiency correction map',...
'callback',@gixs_PushbuttonShowEfficiencyFcn);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Formula','HorizontalAlignment','center',...
'tooltipstring','Material chemical formula. ''N78O21Ar1'' for air; ''N/A'' to disable.',...
'Position',[SizePanel2(1)-215,PosCorrection(2),60,15]);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','center',...
'String','Density',...
'tooltipstring','Mass density. Unit: g/cm^3',...
'Position',[SizePanel2(1)-145,PosCorrection(2),70,15]);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','center',...
'String','Length (mm)',...
'tooltipstring','Unit: mm',...
'Position',[SizePanel2(1)-75,PosCorrection(2),70,15]);
uicontrol('Parent',hPanel2,'style','Text', 'Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Camera sensor ',...
'Position',[SizePanel2(1)-105*3,PosCorrection(2)-50,90,15]);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','X-ray path ',...
'Position',[SizePanel2(1)-105*3,PosCorrection(2)-25,90,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','N78O21Ar',...
'Position',[SizePanel2(1)-220,PosCorrection(2)-25,70,20],...
'Tag','gixs_EditEffc11',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left',...
'String','0.0011839','Enable','on',...
'Position',[SizePanel2(1)-145,PosCorrection(2)-25,70,20],...
'Tag','gixs_EditEffc12',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','0',...
'Position',[SizePanel2(1)-75,PosCorrection(2)-25,70,20],...
'Tag','gixs_EditEffc13',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','Si',...
'Position',[SizePanel2(1)-220,PosCorrection(2)-50,70,20],...
'Tag','gixs_EditEffc21',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','2.33',...
'Position',[SizePanel2(1)-145,PosCorrection(2)-50,70,20],...
'Tag','gixs_EditEffc22',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','0.32',...
'Position',[SizePanel2(1)-75,PosCorrection(2)-50,70,20],...
'Tag','gixs_EditEffc23',...
'callback',@updateparamsFcn);
% --- polarization field
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Polarization',...
'Position',[SizePanel2(1)-105*4,PosCorrection(2)-75,100,20],...
'Tag','gixs_PushbuttonShowPolarization',...
'TooltipString','Show polarization correction map',...
'callback',@gixs_PushbuttonShowPolarizationFcn);
uicontrol('Parent',hPanel2,'Style','Popupmenu','unit','pixel',...
'Position',[SizePanel2(1)-105*3 PosCorrection(2)-75 100 20],...
'HorizontalAlignment','right','backgroundcolor','w',...
'String',{'None','Horizontal','Vertical','Unpolarized (lab source)'},...
'value',2,'Enable','on',...
'Tag','gixs_PopupmenuPolarization',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Horizontal polarization fraction',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*2-2,PosCorrection(2)-75,150,15]);
uicontrol('Parent',hPanel2,'style','Edit','Units','pixel',...
'backgroundcolor','w','HorizontalAlignment','left','Enable','on',...
'String','1',...
'Position',[SizePanel2(1)-55,PosCorrection(2)-75,50,20],...
'Tag','gixs_EditHPF',...
'TooltipString','Value between [0,1]. This only applies to horizontal and vertical polarizations. A value of 0.5 is equivalent to unpolarized.',...
'callback',@updateparamsFcn);
% --- Lorentz correction
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Lorentz Factor',...
'Position',[SizePanel2(1)-105*4,PosCorrection(2)-100,100,20],...
'Tag','gixs_PushbuttonShowLF',...
'TooltipString','Show Lorentz factor correction matrix',...
'callback',@gixs_PushbuttonShowLFFcn);
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Configuration ',...
'TooltipString','See manual for details of choosing the right configuration',...
'Position',[SizePanel2(1)-105*3,PosCorrection(2)-100,100,15]);
lorentzfactortype_str = {...
'1: No Lorentz correction',...
'2: In-plane randomly oriented 3D structures (for reflection only)',...
'3: In-plane randomly oriented 2D structures (for reflection only)',...
'4: Randomly oriented objects'};
uicontrol('Parent',hPanel2,'Style','Popupmenu','unit','pixel',...
'Position',[SizePanel2(1)-105*2,PosCorrection(2)-100,205,20],...
'HorizontalAlignment','right','backgroundcolor','w',...
'String',lorentzfactortype_str,...
'value',1,'Enable','on',...
'Tag','gixs_PopupmenuLorentzFactorType',...
'callback',@updateparamsFcn);
% --- flat field
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Flat Field',...
'Position',[SizePanel2(1)-105*4,PosCorrection(2)-125,100,20],...
'Tag','gixs_PushbuttonShowFF',...
'TooltipString','Show current flat field',...
'callback',@gixs_PushbuttonShowFFFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Remove FF',...
'Position',[SizePanel2(1)-105*3,PosCorrection(2)-125,100,20],...
'Tag','gixs_PushbuttonRemoveFF',...
'TooltipString','Remove flat field correction',...
'callback',@gixs_PushbuttonRemoveFFFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Default FF',...
'Position',[SizePanel2(1)-105*2,PosCorrection(2)-125,100,20],...
'Tag','gixs_PushbuttonRestoreFF',...
'TooltipString','Restore to default flat field',...
'callback',@gixs_PushbuttonRestoreFFFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Load FF File...',...
'Position',[SizePanel2(1)-105*1,PosCorrection(2)-125,100,20],...
'Tag','gixs_PushbuttonLoadFF',...
'TooltipString','Load flat field .tif or .mat mask file. Correction is performed by multiplication.',...
'callback',@gixs_PushbuttonLoadFFFcn);
% --- custom correction
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Custom Correction',...
'Position',[SizePanel2(1)-105*4,PosCorrection(2)-150,100,20],...
'Tag','gixs_PushbuttonShowCC',...
'TooltipString','Show current custom correction',...
'callback',@gixs_PushbuttonShowCCFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Remove CC',...
'Position',[SizePanel2(1)-105*3,PosCorrection(2)-150,100,20],...
'Tag','gixs_PushbuttonRemoveCC',...
'TooltipString','Remove custom correction',...
'callback',@gixs_PushbuttonRemoveCCFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Default CC',...
'Position',[SizePanel2(1)-105*2,PosCorrection(2)-150,100,20],...
'Tag','gixs_PushbuttonRestoreCC',...
'TooltipString','Restore to default custom correction',...
'callback',@gixs_PushbuttonRestoreCCFcn);
uicontrol('Parent',hPanel2,'style','pushbutton','unit','pixel',...
'String','Load CC File...',...
'Position',[SizePanel2(1)-105*1,PosCorrection(2)-150,100,20],...
'Tag','gixs_PushbuttonLoadCC',...
'TooltipString','Load custom correction .tif or .mat file. Correction is performed by multiplication.',...
'callback',@gixs_PushbuttonLoadCCFcn);
% --- plot parameters
PosPP = [5,SizePanel2(2)-375,100,15];
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','left',...
'String','Plot Settings:',...
'Position',PosPP);
% Scale
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Data to display ',...
'TooltipString','Selection does not affect data analysis such as linecut, which uses the fully corrected data.',...
'Position',[SizePanel2(1)-105*4,PosPP(2)-25,100,15]);
uicontrol('Parent',hPanel2,'Style','Popupmenu','unit','pixel',...
'Position',[SizePanel2(1)-105*3 PosPP(2)-25 100 20],...
'HorizontalAlignment','right','backgroundcolor','w',...
'String',{'Masked w/ FF','Fully Corrected','Raw Data'},...
'value',1,'Enable','on',...
'Tag','gixs_PopupmenuPlotImageFlag',...
'callback',@updateparamsFcn);
% Scale
uicontrol('Parent',hPanel2,'style','Text','Units','pixel',...
'backgroundcolor',panelcolor,'HorizontalAlignment','right',...
'String','Image scale ',...
'Position',[SizePanel2(1)-105*4,PosPP(2)-50,100,15]);
uicontrol('Parent',hPanel2,...
'Style','Popupmenu',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3 PosPP(2)-50 100 20],...
'HorizontalAlignment','right',...
'backgroundcolor','w',...
'String',{'linear','log'},...
'value',2,...
'Enable','on',...
'Tag','gixs_PopupmenuPlotScale',...
'callback',@updateparamsFcn);
% axis type
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Axis label ',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*4,PosPP(2)-75,100,15]);
uicontrol('Parent',hPanel2,...
'Style','Popupmenu',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3 PosPP(2)-75 100 20],...
'HorizontalAlignment','right',...
'backgroundcolor','w',...
'String',{'pixel','q (reflection only)','angle (reflection only)'},...
'value',1,...
'Enable','on',...
'Tag','gixs_PopupmenuPlotAxisLabel',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Reset Axis',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3,PosPP(2)-100,100,20],...
'Tag','gixs_PushbuttonResetAxis',...
'callback',@gixs_PushbuttonResetAxisFcn);
% - Color settings
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Color limits set mode ',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*2,PosPP(2)-25,100,15]);
uicontrol('Parent',hPanel2,...
'Style','Popupmenu',...
'unit','pixel',...
'Position',[SizePanel2(1)-105 ,PosPP(2)-25 100 20],...
'HorizontalAlignment','right',...
'backgroundcolor','w',...
'String',{'Manual','Automatic'},...
'value',1,...
'Enable','on',...
'Tag','gixs_PopupmenuPlotCLimsType',...
'callback',@updateparamsFcn);
% CLims1
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','CLim min ',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*2,PosPP(2)-50,50,15]);
uicontrol('Parent',hPanel2,...
'style','Edit',...
'Units','pixel',...
'backgroundcolor','w',...
'String','1',...
'HorizontalAlignment','left',...
'Enable','on',...
'Position',[SizePanel2(1)-105-2.5, PosPP(2)-50,50,20],...
'Tag','gixs_EditPlotCLims1',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','<<',...
'unit','pixel',...
'Position',[SizePanel2(1)-105-50-5,PosPP(2)-50,25,20],...
'Tag','gixs_PushbuttonCLims1MM',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','<',...
'unit','pixel',...
'Position',[SizePanel2(1)-105-25-5,PosPP(2)-50,25,20],...
'Tag','gixs_PushbuttonCLims1M',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','>',...
'unit','pixel',...
'Position',[SizePanel2(1)-105+50,PosPP(2)-50,25,20],...
'Tag','gixs_PushbuttonCLims1P',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','>>',...
'unit','pixel',...
'Position',[SizePanel2(1)-105+75,PosPP(2)-50,25,20],...
'Tag','gixs_PushbuttonCLims1PP',...
'callback',@gixs_PushbuttonCLimsFcn);
% CLims2
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','CLim max ',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*2,PosPP(2)-75,50,15]);
uicontrol('Parent',hPanel2,...
'style','Edit',...
'Units','pixel',...
'backgroundcolor','w',...
'String','2000',...
'HorizontalAlignment','left',...
'Enable','on',...
'Position',[SizePanel2(1)-105-2.5, PosPP(2)-75,50,20],...
'Tag','gixs_EditPlotCLims2',...
'callback',@updateparamsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','<<',...
'unit','pixel',...
'Position',[SizePanel2(1)-105-50-5,PosPP(2)-75,25,20],...
'Tag','gixs_PushbuttonCLims2MM',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','<',...
'unit','pixel',...
'Position',[SizePanel2(1)-105-25-5,PosPP(2)-75,25,20],...
'Tag','gixs_PushbuttonCLims2M',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','>',...
'unit','pixel',...
'Position',[SizePanel2(1)-105+50,PosPP(2)-75,25,20],...
'Tag','gixs_PushbuttonCLims2P',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','>>',...
'unit','pixel',...
'Position',[SizePanel2(1)-105+75,PosPP(2)-75,25,20],...
'Tag','gixs_PushbuttonCLims2PP',...
'callback',@gixs_PushbuttonCLimsFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Colormap Editor',...
'unit','pixel',...
'Position',[SizePanel2(1)-105,PosPP(2)-100,100,20],...
'Tag','gixs_PushbuttonColormapEditor',...
'callback',@gixs_PushbuttonColormapEditorFcn);
% manual tick label
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Manual tick label ',...
'HorizontalAlignment','right',...
'Position',[SizePanel2(1)-105*4,PosPP(2)-125,100,15]);
uicontrol('Parent',hPanel2,...
'Style','Popupmenu',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3 PosPP(2)-125 100 20],...
'HorizontalAlignment','right',...
'backgroundcolor','w',...
'String',{'Horizontal axis','Vertical axis'},...
'value',1,...
'Enable','on',...
'Tag','gixs_PopupmenuManualTickLabel');
uicontrol('Parent',hPanel2,...
'style','Edit',...
'Units','pixel',...
'backgroundcolor','w',...
'Tooltipstring','Provide an array of tick values such as -1:0.1:1, [1,3,4], etc. Empty or invalid array hides ticks.',...
'String','',...
'HorizontalAlignment','left',...
'Enable','on',...
'Position',[SizePanel2(1)-105*2, PosPP(2)-125,100,20],...
'Tag','gixs_EditManualTickLabel');
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Label Ticks',...
'unit','pixel',...
'Position',[SizePanel2(1)-105,PosPP(2)-125,100,20],...
'Tag','gixs_PushbuttonManualTickLabel',...
'callback',@gixs_PushbuttonManualTickLabelFcn);
% --- mask parameters
PosMask = [5,SizePanel2(2)-525,100,15];
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Mask Tools:',...
'HorizontalAlignment','left',...
'Position',PosMask);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Show Mask',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*4,PosMask(2)-25,100,20],...
'Tag','gixs_PushbuttonShowMask',...
'TooltipString','Show current mask in a seperate figure',...
'callback',@gixs_PushbuttonShowMaskFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Include ...',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3,PosMask(2),100,20],...
'Tag','gixs_PushbuttonIncludeMask',...
'TooltipString','Include region interactively',...
'callback',@gixs_PushbuttonAddMaskFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Exclude ...',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*2,PosMask(2),100,20],...
'Tag','gixs_PushbuttonExcludeMask',...
'TooltipString','Exclude region interactively',...
'callback',@gixs_PushbuttonAddMaskFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Load Mask File...',...
'unit','pixel',...
'Position',[SizePanel2(1)-105,PosMask(2),100,20],...
'Tag','gixs_PushbuttonLoadMask',...
'TooltipString','Add additional mask from .tif or .mat mask file (1/0 binary)',...
'callback',@gixs_PushbuttonLoadMaskFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Clear Mask',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3,PosMask(2)-25,100,20],...
'Tag','gixs_PushbuttonClearMask',...
'TooltipString','Clear mask',...
'callback',@gixs_PushbuttonClearMaskFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Default',...
'unit','pixel',...
'Position',[SizePanel2(1)-210,PosMask(2)-25,100,20],...
'Tag','gixs_PushbuttonRestoreMask',...
'TooltipString','Restore to default mask',...
'callback',@gixs_PushbuttonRestoreMaskFcn);
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Export Mask ...',...
'unit','pixel',...
'Position',[SizePanel2(1)-105,PosMask(2)-25,100,20],...
'Tag','gixs_PushbuttonExportMask',...
'TooltipString','Export current mask to .mat or .tif mask file',...
'callback',@gixs_PushbuttonExportMaskFcn);
% --- image orientaion
PosOrientation = [5,SizePanel2(2)-570,300,15];
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Image Orientation:',...
'HorizontalAlignment','left',...
'Position',PosOrientation);
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Mirror',...
'HorizontalAlignment','center',...
'Position',[SizePanel2(1)-105*3 PosOrientation(2) 100 15]);
uicontrol('Parent',hPanel2,...
'style','Text',...
'Units','pixel',...
'backgroundcolor',panelcolor,...
'String','Rotation (deg)',...
'TooltipString','Clockwise',...
'HorizontalAlignment','center',...
'Position',[SizePanel2(1)-105*2 PosOrientation(2) 100 15]);
uicontrol('Parent',hPanel2,...
'Style','Popupmenu',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*3 PosOrientation(2)-25 100 20],...
'HorizontalAlignment','right',...
'backgroundcolor','w',...
'String',{'None','Left-right','Up-down'},...
'value',1,...
'Enable','on',...
'callback',@updateparamsFcn,...
'Tag','gixs_PopupmenuOrientationFlip');
uicontrol('Parent',hPanel2,...
'Style','Popupmenu',...
'unit','pixel',...
'Position',[SizePanel2(1)-105*2 PosOrientation(2)-25 100 20],...
'HorizontalAlignment','left',...
'backgroundcolor','w',...
'String',{'0','90','180','270'},...
'value',1,...
'Enable','on',...
'callback',@updateparamsFcn,...
'Tag','gixs_PopupmenuOrientationRotation');
uicontrol('Parent',hPanel2,...
'style','pushbutton',...
'String','Apply',...
'unit','pixel',...
'Position',[SizePanel2(1)-105 PosOrientation(2)-25 100 20],...
'Tag','gixs_PushbuttonOrientationApply',...
'TooltipString','Apply orientation changes to the current image. This may take a few seconds to a minute. One should do this after flat field and mask are applied.',...
'callback',@gixs_PushbuttonOrientationApply);