Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support autodetection for macromolecules file formats #1929

Open
rrodionov91 opened this issue Apr 24, 2024 · 0 comments
Open

Support autodetection for macromolecules file formats #1929

rrodionov91 opened this issue Apr 24, 2024 · 0 comments
Labels
Feature
Milestone
Refined Backlog

Comments

@rrodionov91
Copy link
Collaborator

rrodionov91 commented Apr 24, 2024 •
edited

Background
Currently convert api method allows to detect file format automatically if parameter input_format: chemical/x-unknown passed.
However for sequence and fasta formats it is impossible to identify which type of sequence need to be converted (peptide, rna or dna).

Solution
Introduce new parameter monomer_type: <RNA | DNA | PEPTIDE> and format autodetection for sequence ans fasta formats.
@rrodionov91 rrodionov91 added this to the Indigo-1.21.0-rc.1 milestone Apr 25, 2024
@rrodionov91 rrodionov91 changed the title Support sequence type parameter for convert api method with format autodetection Support autodetection for macromolecules file formats Apr 25, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
Feature
Projects
None yet
Milestone
Refined Backlog
Development

No branches or pull requests
2 participants
@rrodionov91 @AlexeyGirin