Workflow Outputs

[jsotobroad]

When I was copying in wdl to visualize, for some reason all of my workflow outputs were being removed when I hit Build. It looks like it gave me a new line for each output that should be there but didnt actually write anything.

output {
  AutoCall.gtc_file
  MergePedIntoVcf.*
  CollectArraysVariantCallingMetrics.*
  CheckFingerprint.*
  GenotypeConcordance.*
}

to

 output {





  }

I couldn't get any workflow outputs to show up but if they are supposed to be there the following comment is worth noting. Some visualization of which outputs are workflow outputs would be cool to have so you easily see where all your "important" outputs are.

[sidoruka]

@jsotobroad , described issue is caused by wildcards * in output section. This is hopefully fixed in PR #19. Could you verify this using your script on http://pb.opensource.epam.com:10000/ ?

[jsotobroad]

I don't seem to be able to build(visually display) any wdls using http://pb.opensource.epam.com:10000/ . I tried writing a very simple one to see if that would build and that didn't build either. I'm not getting any kind of error text like I normally would get when a build fails.

[sidoruka]

Sorry, seems that it was broken by PR #20
Could you please retry? I've double checked this issue (outputs do not disappear anymore). Also #16 shall work fine.
Please make sure to fully reload http://pb.opensource.epam.com:10000 , version in a footer shall be "0.3.4"

[jsotobroad]

The outputs are showing up! Looks good