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Not handling valid WDL #56

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coverbeck opened this issue Aug 27, 2019 · 2 comments
Open

Not handling valid WDL #56

coverbeck opened this issue Aug 27, 2019 · 2 comments

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@coverbeck
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For this valid WDL, the error Unrecognized token on line 102, column 36: snaptools align-paired-end \ ^ when trying it in EPAM Pipeline Builder.

  1. Go to http://pb.opensource.epam.com:10000/
  2. Paste the contents of the above link
  3. Build

This file is WDL 1.0, not sure if that's relevant to this issue.

@illusional
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Hey @coverbeck, I'm not the repo owner but I noticed the same thing. The grammar is fairly out of date, last commit was 10 May, 2017.

I built a new version of the grammar, but couldn't actually get the project properly building to test it.

@TimSPb89
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TimSPb89 commented Jan 9, 2020

Hello @coverbeck, @illusional, that's true WDL v1.0 is not supported by the pipeline builder at the moment.
We're currently investigating the possibility to support this feature in the near future and will keep you updated on this.

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