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Hello @coverbeck, @illusional, that's true WDL v1.0 is not supported by the pipeline builder at the moment.
We're currently investigating the possibility to support this feature in the near future and will keep you updated on this.
For this valid WDL, the error
Unrecognized token on line 102, column 36: snaptools align-paired-end \ ^
when trying it in EPAM Pipeline Builder.This file is WDL 1.0, not sure if that's relevant to this issue.
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