Solidify new HPC methods from ALG into EpiModelHPC

[AdrienLeGuillou]

Projects like PAFGuidelines, CombPrevNet and SexualDistancing uses a bespoke set of functions to send, run and gather simulations with Slurm.

These functions allow a quick back and forth between Slurm and the local machine which greatly simplify the calibration process.

However, these functions are not easily understandable as there is not a comprehensive API allowing to simply go from the local script to the slurm workflow.

I need to rework these functions to make their usage simpler and to allow the user to easily implement multi-steps workflows (simulation, extraction, analysis) on slurm. These workflow would greatly simplify the interaction with Slurm and the reproducibility of the code. A proof of concept of such workflow was used in a previous project but the implementation was not great and the usage very obscure.

[AdrienLeGuillou]

#15