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DESCRIPTION
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DESCRIPTION
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Package: epinowcast
Title: Flexible Hierarchical Nowcasting
Version: 0.2.0.8000
Authors@R:
c(person(given = "Sam Abbott",
role = c("aut", "cre"),
email = "sam.abbott@lshtm.ac.uk",
comment = c(ORCID = "0000-0001-8057-8037")),
person(given = "Adrian",
family = "Lison",
role = "aut",
email = "adrian.lison@bsse.ethz.ch",
comment = c(ORCID = "0000-0002-6822-8437")),
person(given = "Sebastian",
family = "Funk",
role = "aut",
email = "sebastian.funk@lshtm.ac.uk"),
person(given = "Michael",
family = "DeWitt",
role = "ctb",
email = "me.dewitt.jr@gmail.com",
comment = c(ORCID = "0000-0001-8940-1967")),
person(given = "Hannah",
family = "Choi",
role = "ctb",
email = "hannah.choi1@lshtm.ac.uk"),
person(given = "Carl",
family = "Pearson",
role = "aut",
email = "carl.ab.pearson@gmail.com",
comment = c(ORCID = "0000-0003-0701-7860")))
Description: Tools to enable flexible and efficient hierarchical nowcasting of
right-truncated epidemiological time-series using a semi-mechanistic
Bayesian model with support for a range of reporting and generative
processes. Nowcasting, in this context, is gaining situational awareness
using currently available observations and the reporting patterns of
historical observations. This can be useful when tracking the spread of
infectious disease in real-time: without nowcasting, changes in trends can
be obfuscated by partial reporting or their detection may be delayed due to
the use of simpler methods like truncation. While the package has been
designed with epidemiological applications in mind, it could be applied
to any set of right-truncated time-series count data.
License: MIT + file LICENSE
URL: https://package.epinowcast.org,
https://github.com/epinowcast/epinowcast/
BugReports: https://github.com/epinowcast/epinowcast/issues/
Depends:
R (>= 3.5.0)
Imports:
cmdstanr,
data.table,
lme4,
ggplot2,
posterior,
purrr,
rstan,
scales
Suggests:
loo (>= 2.4.1),
knitr,
rmarkdown,
scoringutils,
spelling,
testthat (>= 3.0.0),
usethis,
vdiffr
VignetteBuilder:
knitr
Remotes:
stan-dev/cmdstanr,
stan-dev/loo
Config/Needs/website:
r-lib/pkgdown,
amirmasoudabdol/preferably
Config/Needs/hexsticker:
hexSticker,
sysfonts
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
SystemRequirements: CmdStan (>=2.29)