RStudio running in a docker container. This image can be used to integrate RStudio into Galaxy through the Interactive Tools mechanism.
A variety of different packages are pre-installed and can be used right away.
This repository has submodules, please clone recursively:
git clone --recursive https://github.com/hexylena/docker-rstudio-notebook
| Variable | Use |
|---|---|
RSTUDIO_FULL |
Build RStudio with the full complement of Bio packages (warning, slow) |
| Variable | Use |
|---|---|
GALAXY_WEB_PORT |
Port on which Galaxy is running, if applicable |
CORS_ORIGIN |
If the notebook is proxied, this is the URL the end-user will see when trying to access a notebook |
DOCKER_PORT |
Used in Galaxy Interactive Environments to ensure that proxy routes are unique and accessible |
API_KEY |
Galaxy API Key with which to interface with Galaxy |
HISTORY_ID |
ID of current Galaxy History, used in easing the dataset upload/download process |
REMOTE_HOST |
Unused |
GALAXY_URL |
URL at which Galaxy is accessible |
DEBUG |
Enable debugging mode, mostly for developers |
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