The MPS algorithms are run from the commandline using a parameter
filename as an argument.
If no argument is given, the default parameter file is assumed to the
be name of the simulation
algorithm appended with '.txt'.
Therefore
mps_genesim mps_snesim_tree mps_snesim_list
will be equivalent to
mps_genesim mps_genesim.txt mps_snesim_tree mps_snesim_tree.txt mps_snesim_list mps_snesim_list.txt
.. toctree:: :maxdepth: 1 running chapGenesim/mps_genesim chapSnesim/mps_snesim