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Makefile
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Makefile
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OLDTEX=/usr/local/texlive/2011/bin/universal-darwin/
all: getbib paper.pdf # paper-main.pdf paper-supplemental.pdf
clean:
rm paper.pdf paper.bcf paper.blg paper.aux paper.bbl paper.log paper.out paper.run.xml arxiv.pdf arxiv.bcf arxiv.blg arxiv.aux arxiv.bbl arxiv.log
BIBHOME=${HOME}/Documents/
getbib:
cp "${BIBHOME}/connectomics motif.bib" .
cp "${BIBHOME}/connectomics motif-relational models.bib" .
techreport.pdf: techreport.tex
pdflatex techreport.tex
bibtex8 techreport
pdflatex techreport.tex
paper.pdf: paper.tex
pdflatex paper.tex
biber paper
pdflatex paper.tex
arxiv.pdf: paper.tex
rm -f paper.bbl
cp paper.tex arxiv.tex
export PATH=${OLDTEX}:$$PATH; pdflatex arxiv.tex
export PATH=${OLDTEX}:$$PATH; biber arxiv
export PATH=${OLDTEX}:$$PATH; pdflatex arxiv.tex
arxiv.tar.gz: arxiv.pdf arxiv.tex
tar czvf arxiv.tar.gz arxiv.tex arxiv.bbl 00README.XXX `python getgraphics.py paper.tex`
MOUSERETINA_TGT=../experiments/mouseretina/data/retina.1.srm_clist_xsoma.3.1.xyz.1.2.data-fixed_20_100-anneal_slow_1000
MOUSERETINA_OUT=mouseretina/mouseretina_tgt
update_mouseretina:
cp ${MOUSERETINA_TGT}.latent.pdf ${MOUSERETINA_OUT}.latent.pdf
cp ${MOUSERETINA_TGT}.somapos.pdf ${MOUSERETINA_OUT}.somapos.pdf
python svg2ai.py ${MOUSERETINA_TGT}.circos.01.svg ${MOUSERETINA_OUT}.circos.ai ${MOUSERETINA_TGT}.circos.00.small.svg ${MOUSERETINA_OUT}.circos.00.small.ai ${MOUSERETINA_TGT}.circos.01.small.svg ${MOUSERETINA_OUT}.circos.01.small.ai ${MOUSERETINA_TGT}.circos.02.small.svg ${MOUSERETINA_OUT}.circos.02.small.ai
cp ${MOUSERETINA_TGT}.z.pdf ${MOUSERETINA_OUT}.z.pdf
dropbox:
cp -r * ~/Dropbox/jonaskording-connectomics
update_celegans:
cp ../experiments/celegans/*.pdf celegans/
update_synthdifferent:
cp ../experiments/synthdifferent/*.pdf synthdifferent/
debug: paper.pdf
biber paper | grep "didn't"
grep "LaTeX Warning" paper.log
paper-main.pdf: paper.pdf
pdftk paper.pdf cat 1-13 output paper-main.pdf
paper-supplemental.pdf: paper.pdf
pdftk paper.pdf cat 14-19 output paper-supplemental.pdf