-
Notifications
You must be signed in to change notification settings - Fork 3
/
intsitesdev.sql
98 lines (86 loc) · 3.48 KB
/
intsitesdev.sql
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
-- MySQL dump 10.13 Distrib 5.5.43, for debian-linux-gnu (x86_64)
--
-- Host: microb98.med.upenn.edu Database: intsitesdev
-- ------------------------------------------------------
-- Server version 5.5.5-10.0.15-MariaDB
/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
/*!40101 SET NAMES utf8 */;
/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
/*!40103 SET TIME_ZONE='+00:00' */;
/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
--
-- Table structure for table `multihitlengths`
--
DROP TABLE IF EXISTS `multihitlengths`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `multihitlengths` (
`multihitClusterID` int(11) unsigned NOT NULL,
`length` int(11) unsigned NOT NULL,
`count` int(8) unsigned NOT NULL DEFAULT '1',
KEY `multihitClusterID` (`multihitClusterID`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `pcrbreakpoints`
--
DROP TABLE IF EXISTS `pcrbreakpoints`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `pcrbreakpoints` (
`siteID` int(11) unsigned NOT NULL,
`breakpoint` int(11) unsigned NOT NULL,
`count` int(8) unsigned NOT NULL DEFAULT '1',
PRIMARY KEY (`siteID`,`breakpoint`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `samples`
--
DROP TABLE IF EXISTS `samples`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `samples` (
`sampleID` int(11) unsigned NOT NULL,
`sampleName` varchar(255) NOT NULL DEFAULT '',
`refGenome` varchar(10) NOT NULL DEFAULT '',
`gender` char(1) NOT NULL DEFAULT '',
PRIMARY KEY (`sampleID`),
UNIQUE KEY `sampleName` (`sampleName`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `sites`
--
DROP TABLE IF EXISTS `sites`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `sites` (
`siteID` int(11) unsigned NOT NULL,
`sampleID` int(11) unsigned NOT NULL,
`position` int(11) unsigned NOT NULL,
`chr` varchar(20) NOT NULL DEFAULT '',
`strand` char(1) NOT NULL DEFAULT '',
`multihitClusterID` int(11) DEFAULT NULL,
PRIMARY KEY (`siteID`),
KEY `sampleID` (`sampleID`),
KEY `multihitClusterID` (`multihitClusterID`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Dumping routines for database 'intsitesdev'
--
/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */;
/*!40101 SET SQL_MODE=@OLD_SQL_MODE */;
/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */;
/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */;
/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */;
/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */;
/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */;
/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
-- Dump completed on 2015-05-29 12:00:03