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README.md

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ReadMe

Repository containing data processing code used for Sogin et al. in prep Sweet spots in the sea.

Scripts repository structure

Scripts

Metabolomic

  1. peak_picking.R
  2. non_targeted.R
  3. targeted_anlaysis.html
  4. estimate_global_sucrose.R

Metagenomic

  1. assembly.sh
  2. coassembly.sh
  3. annotation.sh
  4. transcriptomics.sh
  5. kalliso_counts.R
  6. pac_bio_16S.R