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I'm using MMSeq to quantify haplotype-specific expression. I wonder if it is advised to filter out the transcripts/genes that:
(1) have zero "unique_hits" in the *.mmseq file
and
(2) have identical haplotype sequences as indicated in *.identical.mmseq file
Thanks,
The text was updated successfully, but these errors were encountered:
1) I wouldn't filter out the ones with zero unique_hits. 2) The "identical" transcripts have exactly the same sequence so yes I would use the aggregate summaries in the *identical.mmseq files.
On 6 Sep 2019, at 14:01, weishwu ***@***.***> wrote:
Hi,
I'm using MMSeq to quantify haplotype-specific expression. I wonder if it is advised to filter out the transcripts/genes that:
(1) have zero "unique_hits" in the *.mmseq file
and
(2) have identical haplotype sequences as indicated in *.identical.mmseq file
Thanks,
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Hi,
I'm using MMSeq to quantify haplotype-specific expression. I wonder if it is advised to filter out the transcripts/genes that:
(1) have zero "unique_hits" in the *.mmseq file
and
(2) have identical haplotype sequences as indicated in *.identical.mmseq file
Thanks,
The text was updated successfully, but these errors were encountered: