update 0.8.1

Documentation/EGADS Algorithm Handbook - LATEX/EGADS_alg_doc.tex

@@ -253,59 +253,59 @@ \chapter{Radiation}
 
 \include{algorithms/radiation/temp_blackbody}
 
-\part{Hyperspectral Algorithms}
-
-\chapter{Biophysics}
-
-\include{algorithms/biophysics/NDVI}
-
-\include{algorithms/biophysics/RVI}
-
-\include{algorithms/biophysics/MCARI}
-
-\include{algorithms/biophysics/LCI}
-
-\include{algorithms/biophysics/SR705}
-
-\include{algorithms/biophysics/mND705}
-
-\include{algorithms/biophysics/GI}
-
-\include{algorithms/biophysics/PRI}
-
-\include{algorithms/biophysics/REIP}
-
-\include{algorithms/biophysics/DGVI1}
-
-\include{algorithms/biophysics/DGVI2}
-
-\include{algorithms/biophysics/NDNI}
-
-\include{algorithms/biophysics/NDLI}
-
-\include{algorithms/biophysics/CAI}
-
-\include{algorithms/biophysics/CSI2}
-
-\include{algorithms/biophysics/NDWI}
-
-\include{algorithms/biophysics/NDWI_MIR}
-
-\include{algorithms/biophysics/LWVI1}
-
-\include{algorithms/biophysics/LWVI2}
-
-\include{algorithms/biophysics/DWSI5}
-
-\include{algorithms/biophysics/SWIRVI}
-
-\include{algorithms/biophysics/SWIRLI}
-
-\include{algorithms/biophysics/SWIRSI}
-
-\include{algorithms/biophysics/clay_1}
-
-\include{algorithms/biophysics/iron_1}
+% \part{Hyperspectral Algorithms}
+% 
+% \chapter{Biophysics}
+% 
+% \include{algorithms/biophysics/NDVI}
+% 
+% \include{algorithms/biophysics/RVI}
+% 
+% \include{algorithms/biophysics/MCARI}
+% 
+% \include{algorithms/biophysics/LCI}
+% 
+% \include{algorithms/biophysics/SR705}
+% 
+% \include{algorithms/biophysics/mND705}
+% 
+% \include{algorithms/biophysics/GI}
+% 
+% \include{algorithms/biophysics/PRI}
+% 
+% \include{algorithms/biophysics/REIP}
+% 
+% \include{algorithms/biophysics/DGVI1}
+% 
+% \include{algorithms/biophysics/DGVI2}
+% 
+% \include{algorithms/biophysics/NDNI}
+% 
+% \include{algorithms/biophysics/NDLI}
+% 
+% \include{algorithms/biophysics/CAI}
+% 
+% \include{algorithms/biophysics/CSI2}
+% 
+% \include{algorithms/biophysics/NDWI}
+% 
+% \include{algorithms/biophysics/NDWI_MIR}
+% 
+% \include{algorithms/biophysics/LWVI1}
+% 
+% \include{algorithms/biophysics/LWVI2}
+% 
+% \include{algorithms/biophysics/DWSI5}
+% 
+% \include{algorithms/biophysics/SWIRVI}
+% 
+% \include{algorithms/biophysics/SWIRLI}
+% 
+% \include{algorithms/biophysics/SWIRSI}
+% 
+% \include{algorithms/biophysics/clay_1}
+% 
+% \include{algorithms/biophysics/iron_1}
 
 
 

Documentation/EGADS Algorithm Handbook - LATEX/EGADS_alg_doc.toc

@@ -0,0 +1,53 @@
+\contentsline {chapter}{\numberline {1}Introduction}{1}{chapter.1}
+\contentsline {part}{I\hspace {1em}General Algorithms}{2}{part.1}
+\contentsline {chapter}{\numberline {2}Mathematics}{3}{chapter.2}
+\contentsline {section}{\numberline {2.1}Time Derivative}{4}{section.2.1}
+\contentsline {chapter}{\numberline {3}Corrections}{5}{chapter.3}
+\contentsline {section}{\numberline {3.1}Simple correction of spikes}{6}{section.3.1}
+\contentsline {chapter}{\numberline {4}Transforms}{7}{chapter.4}
+\contentsline {section}{\numberline {4.1}Linear Interpolation}{8}{section.4.1}
+\contentsline {section}{\numberline {4.2}Linear Interpolation (old)}{9}{section.4.2}
+\contentsline {section}{\numberline {4.3}Convert ISO 8601 time to date/time elements}{10}{section.4.3}
+\contentsline {section}{\numberline {4.4}Convert ISO 8601 time string to seconds}{11}{section.4.4}
+\contentsline {section}{\numberline {4.5}Convert elapsed seconds to ISO 8601 time string}{12}{section.4.5}
+\contentsline {part}{II\hspace {1em}Atmospheric Algorithms}{13}{part.2}
+\contentsline {chapter}{\numberline {5}Thermodynamics}{14}{chapter.5}
+\contentsline {section}{\numberline {5.1}Pressure altitude }{15}{section.5.1}
+\contentsline {section}{\numberline {5.2}Density of dry air}{16}{section.5.2}
+\contentsline {section}{\numberline {5.3}Relative humidity from capacitive probe }{17}{section.5.3}
+\contentsline {section}{\numberline {5.4}Pressure and angle of incidence (CNRM)}{18}{section.5.4}
+\contentsline {section}{\numberline {5.5}Dynamic pressure and angle of incidence}{19}{section.5.5}
+\contentsline {section}{\numberline {5.6}Potential Temperature}{21}{section.5.6}
+\contentsline {section}{\numberline {5.7}Static Temperature}{22}{section.5.7}
+\contentsline {section}{\numberline {5.8}Virtual Temperature}{23}{section.5.8}
+\contentsline {section}{\numberline {5.9}Mach number}{24}{section.5.9}
+\contentsline {section}{\numberline {5.10}True air speed (CNRM)}{25}{section.5.10}
+\contentsline {section}{\numberline {5.11}True air speed (RAF)}{26}{section.5.11}
+\contentsline {section}{\numberline {5.12}Longitudinal true airspeed}{27}{section.5.12}
+\contentsline {section}{\numberline {5.13}3D Wind Vectors}{28}{section.5.13}
+\contentsline {chapter}{\numberline {6}Microphysics}{29}{chapter.6}
+\contentsline {section}{\numberline {6.1}Effective diameter}{30}{section.6.1}
+\contentsline {section}{\numberline {6.2}Mean diameter}{31}{section.6.2}
+\contentsline {section}{\numberline {6.3}Median Volume Diameter}{32}{section.6.3}
+\contentsline {section}{\numberline {6.4}Extinction Coefficient}{33}{section.6.4}
+\contentsline {section}{\numberline {6.5}Mass Concentration}{34}{section.6.5}
+\contentsline {section}{\numberline {6.6}Total Number Concentration (DMT)}{35}{section.6.6}
+\contentsline {section}{\numberline {6.7}Total Number Concentration}{36}{section.6.7}
+\contentsline {section}{\numberline {6.8}Sample area for imaging probes (All in)}{37}{section.6.8}
+\contentsline {section}{\numberline {6.9}Sample area for imaging probes (Center In)}{38}{section.6.9}
+\contentsline {section}{\numberline {6.10}Sample area for scattering probes}{39}{section.6.10}
+\contentsline {section}{\numberline {6.11}Sample Volume}{40}{section.6.11}
+\contentsline {section}{\numberline {6.12}Surface Area Concentration}{41}{section.6.12}
+\contentsline {chapter}{\numberline {7}Radiation}{42}{chapter.7}
+\contentsline {section}{\numberline {7.1}Camera Viewing Angles}{43}{section.7.1}
+\contentsline {section}{\numberline {7.2}Planck Emission}{44}{section.7.2}
+\contentsline {section}{\numberline {7.3}Rotate solar vector to aircraft frame}{45}{section.7.3}
+\contentsline {section}{\numberline {7.4}Scattering Angles}{47}{section.7.4}
+\contentsline {section}{\numberline {7.5}Solar Vector Calculation (Blanco)}{48}{section.7.5}
+\contentsline {section}{\numberline {7.6}Solar Vector Calculation (Reda-Andreas)}{50}{section.7.6}
+\contentsline {section}{\numberline {7.7}Blackbody Temperature}{56}{section.7.7}
+\contentsline {chapter}{\numberline {8}Quality Control}{57}{chapter.8}
+\contentsline {section}{\numberline {8.1}Check navigation data for inconsistencies}{58}{section.8.1}
+\contentsline {section}{\numberline {8.2}Additional consistency check \& QA for navigation data (no correction!)}{60}{section.8.2}
+\contentsline {chapter}{Index}{62}{section.8.2}
+\contentsline {chapter}{Bibliography and references}{62}{section.8.2}

Documentation/EGADS Algorithm Handbook - LATEX/cover/alg_cover.tex

@@ -24,7 +24,7 @@
 \setlength{\voffset}{.0cm}
 
 \logoeufar
-\title{EUFAR}{Standards and Protocols}{EGADS Algorithm Handbook}{Version 0.8.0}
+\title{EUFAR}{Standards and Protocols}{EGADS Algorithm Handbook}{Version 0.8.1}
 %\author{}{}
 
 

Documentation/changelog.txt

@@ -2,9 +2,24 @@
 CHANGELOG
 =========
 
+June 14 2017, Release version 0.8.1
+====================================
+  To allow the creation of new algorithms from the EGADS GUI, new folders have been introduced and pre-loaded.
+
+  FIXED:
+    - an issue with a folder has been fixed in the setup.py.
+    - fixed an issue in the netcdf i/o function when setting an attribute.
+
+  ADDED:
+    - in the netcdf i/o function, the 'missing_value' attribute has been added if the '_FillValue' attribute is missing.
+    - in the netcdf i/o function, the 'delete_attribute' function has been added to remove an attribute from a file or a variable.
+
+  MODIFIED:
+    - the documentation has been updated.
+
 
 March 24 2017, Release version 0.8.0
-=======================================
+====================================
   FIXED:
     - if a user wants to rescale an EgadsData object (unit 1 to unit 2), the metadata attribute disappears. It has been fixed and metadata are passed to the new EgadsData object, with the necessary modifications.
     - if a user wants to slice an EgadsData object, the metadata attribute disappears. It has been fixed.

INSTALL.txt

@@ -28,6 +28,8 @@ to use it, it must be installed to a location on the Python path. To install
 EGADS (assuming priviledged user rights), run the following command from the egads directory:
 
   python setup.py install
+or
+  pip install egads
 
 To install as an unpriviledged user, or to install to a directory of your choosing, the following command can be used:
 
@@ -39,6 +41,12 @@ For information on other install options the --help option can be used:
 
 On Linux systems, the installation of EGADS in the user home directory is encouraged to ensure the proper operation of the EGADS logging system.
 
+If EGADS requirements in term of dependecies are full filled and if the user wants to avoid their installation, the use of the following option is encouraged:
+
+  python setup.py install --no-dep
+or
+  pip install egads --no-dep
+
 
 Testing
 =======

PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 1.1
 Name: egads
-Version: 0.8.0
+Version: 0.8.1
 Summary: EGADS: EUFAR General Airborne Data-processing Software
 Home-page: http://www.eufar.net
 Author: Olivier Henry

README.md

@@ -1,6 +1,6 @@
 Version:
 
-EGADS 0.8.0
+EGADS 0.8.1
 
 Project Overview: