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Fornicata_alignment.fas
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Fornicata_alignment.fas
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>>OUTGROUP__AY831435.1_Monocercomonoides_sp._PA203_18S_ribosomal_RNA_gene,_partial_sequence
--------------------------------------------------------agat
t-aagcca-tgcatgtg---tcagtataaataa------------------cttgtat--
-ttatgaaactgcgaatggctcattacaacagt-tataatttatttga-caatgacaatg
ttatattttgaatagaaatataatttact-------------------------------
--acatggatagccgt-agtaattctagagctaatacatgcgagaattcatttttctttt
tgtttttcggaatggaaagaagggtgggtttgaaaaagatccgactaagggtgtttcagc
aatgagacacccttt----ggggaaggattgtatttattagatcg---------------
---------------------aaaaccattaggaatagtttaaatgtttgattctatatg
gatcaaaaacttatttcggcacatgtttgaagyctcgcaaggggtgtaatgrtrtgtgtc
cattg-------tgaaagataatggtgattcat------------gataaatgt--cgaa
ttgcc-----------------------------------------agggtgg-------
-gttaagagcccatcgtcttggcaatgtgtcattgaaatttctgacctatca-actgatg
atggtaggatag-aggcctaccatggtattgacgggtaacggagaattagggttcgatt-
ccggagagggagcctgagagatggctaccacttccaaggaaggcagcaggcgcgcaaatt
acccaatcccaatcaatgacgtatat------ggggaggtagtgacaaaaaataacaaag
cggggtatctaatgg---------------------------------------------
-tattctgctattggaatggtttcaatgtaaat----gcttgaaagagaaacaa-ttaga
gggcaag-tctggtgccagcagccgcggtaattccagct-ctaatagtgtatactaaaat
tgctgcagttaaaaagctcgtagttggattttggagtttt--------------------
----------taattgttcgagggggcgagatgtt---tctctatacttagtcctgc-tt
catttttctt-attaaattagctttcgggttgatttaatttggaagtgaagtgattggag
ggtattaatgaggggatatttgaaaatcatggtattgtttttaatcttgcatcaagattt
atttcttgttgtttgattgattcartatctttcatttatcttatgcttgc-cttgaattt
gaataacctcgaatccctttttggagaagtccttgtggctttttcaaaaaaggggtaaat
gttttcgaaattattaatatatcacttaaatgttgatttatattaatcgtttctctttgt
caaagaagaggaaaatttcggagagtttactttgaagaaaatggagtgttcaaagcaggc
gttttttttgtaatg-------------------------------aaagaaattcgcta
ctgarcacattagcatggaataata-------aaataagacacc------tgatgtgttt
taaatttg-ataatgaaaaaatataaggaaacttatttattttttgttatcaaacacatt
cgagtcttaaacaataagaagattga-----------acttgttc---------------
-------------------------------tyttttgttattgtttatcgatttgagtt
t------------------------------tattgg-----------------------
-tttttgaa--------------------acaggtgtaa---------------------
------------------------------------------------------------
-------------------------tgattaagagggacagt---t-gggggtatctgta
ttgc-atagtcagaggtggaattcttggatttatgcaagacaaacaagtgcgaaagcatt
tacc---aaggatgttttcat-taatcaa-gaacgaaagttaggggatcgaaggcgatca
gaaaccgctctagtctta---actataaacgatgccaactagggattggagggaatttat
t------tttttaattcgctttt----------------ccaatttctatctttcgggat
aggtggratttatcacaagaaattgtgaagtgagtttgcttttaaaattataacaaaaaa
atgaaagaggtaacttcggttatttgtctttgtttttttgttttt-aagccccatcagca
cct---------------ttagagaaa-tcgattaagtctctgggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaagtctgaaacttaaagaaattgacggaa-gggcaccacca--ggtgtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacggggaaacttaccaggtccagac
a-cgggaagga-ttgacagattgat-agttctttcttgattccgt-gg-gtggtggtgca
t-ggtcgttcttagttggtggagtgatttgtctgg--ttaattccgataacgaa-cgaga
cctcaacctgctaa-atagggtgataattttgaaaagtgtctgtaaggtggctttccgat
ttttttctyartagttctctctctcggg-----------------------ggaggattg
ttgagaaagtcgggaagttgtctgagatcttttaatggttaatattgaaatatatatttt
gagatagctcattaagctttcaggatggatttgttttgagcagtttcggctgtttggaag
aagtttgttttggaagtgagttattgaaattatcattaa-------aatatttcgatatg
gattgtaattctcttttagttaattaatttcatcatggctcttcrcggggttgtggtgga
aggctaatggggctctggatctatattcgaacctacttagaggga-----ctaccatggt
t---gcac--atgggggaagcatgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgataaagtcaacaagttgtttttgggtgtg
ttaaatmaaaaaaatagtgtttttgttttcagggcttcttaatcggggctttgaaaaagg
gatgctatttt----ttaacacatgcaattccctt----atccgaaagga----------
------------------------------------------ttgggtaatcttttgaa-
--actttatcgtgatggggattg-atctttgtaattttggatcatg--aacgaggaatac
ctagtaagtgc-aattca-tcagattgcgctgattacgtccctgccctttgtacacaccg
cccgtcgctcctaccgat-tgaatgatcagatgaaatgtctggattgttggatcttgtga
gggtttcgattctc---------------------------------------------t
aggatttaattagaaggacagtaaatcttattatttagaggaaggagaagtcg-taac--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>GU827589
-----------------------------------agtgatatgcttattt--caaagat
t-aagcca-tgcaagtc---taagttcaagcgatcac------------ctcggtga---
-acgcgaaactgcgataagctcattataaaagt-tagagtgtacaggg-tgcttatccac
aggtggaagt-acaaaggtggggcttgctccgtctgcgtgaacgcttgtattaagagggt
attttcggataactct-ggaaaatctggagctaatacgtgcatgtggtctccgtaaaa--
------------------------------------------------------------
-------------------agaggcccactgtatttatccgctct---------------
---------------------ggaactgaccgt---------------------------
-----------------------------------------------gtcgctgctgctc
ctcggggctggcaaggcatgtgatgtgaacaag------------gataactca-actga
ccgtt-------------------------------------------------------
----------tcctttcggagacggtgcgcccttccactttcttacctatta-actttcg
attgttgtgtag-tggacaacaatggttttgatgggt-acggaggattagggttcgact-
ccggagagtccgccttaaagacggctgacacttccaagggaggcagcaggcgcgaaaatt
acccaatcgaca----------attg------tcggaggtagtgacgaagaatatcaggc
tcgggagactttg-----------------------------------------------
-tcttccagcttcgaaatggatagggcataaat----ccccctatgagaaacta-ctgga
gggcaagatctggtgccagcagccgcggtaataccagct-ccagtagcatatattaaagt
tgctgcagttaaaacgctcgtagttggacttcagagcgcc------araccgtgggccac
tgaaagttt----------tttagtgtg--atgatgcttgagg---------------cc
aatgtctttt-ttgaattagggctgtgaggggaaaccttca-------------------
-----------------------------------------tggttacgttcgc------
---------------attggctgagtcgtcttagtccg-----------c-gtctcgtgt
gctctacgctgcgtctttcttttttttttttctattaa-tccttcgggg-----------
---------------------------------------------------------tta
gtggtaaagaaatgagaagatgccagataccttgaggaaattggagtgttcaaggcaagc
gtaa----------------------------------------------ttttacgcga
ttgaccactgaagcatggaatatcg--------accatgactct-----------tgtca
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------cggc
t------------------------------cgttgg-----------------------
-tttcacgg---ca------------------tgagtaa---------------------
------------------------------------------------------------
-------------------------tgattaataggagcggt---c-ggggccattggta
tgct-tgcgtgagaggtgawatttttagaccgcaggcagaccaactactgcgaaagcatt
tggc---aaggacgctttcat-taatcaa-gaacgaaagttgggggatcgaaggcgatta
gacaccaccgtagtccca---accataaactatgccgactagggattggactttttgtcc
-------------acct-------------------------------------------
------------------------------------------------------------
---------------------------------------ttacaa-tgacacttccagca
cct---------------tatgagaaa-tca---aagtctttgggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------acg
gtcgcaaggctgaaacttaaaggaattgacggag-atmta-cacca--ggtgtggattct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacgcggggaagcttaccaggcccagac
a-ttcgaagga-ttgacagattgaa-agctctttcatgattgttt-ga-tgagtggtgca
t-ggccgtttttagttcgtggagtgatctgtctgc--tttattgcgataacgaa-cgaga
ccaatacctgctaa-atagc--------------------------------ggttatga
cattcagttgactggatgttgggttgataagggaggggttagggaaagagagggggaaag
agga-----tttcggycttttttctctcttttttttctctttcttttgctctttga----
---------tgctcagtgttcaactcgact---------ggcgaaagtgtcgtaattgga
ttgtgg-------aggtgtgttggggaaagyawycctttctcccggcatactatgggggc
gcaagtcttcatcttcgtccacagtctgcgc-----------------------------
---------------------------------ttcttagaggga-----ctacttgcgt
-----aag--cgaggggaagttattgg-caacaac--aggtcagggatgccctttagatg
g----tcttgggctgcacgcgtaatacaatggacggttcaacgagctctgattgacgagt
ttagagtcggaa---ttagttcttgccggtggtgacttc----ggtcattgtcggtgtcc
ctagtttgtcagttctattcatccgtcgtctccta----gcccgaaggggtatgtgtggt
tatcttttcgttctctcgggaatttgaggattgctatgcgtttggggtaatcttgtgaa-
--aaccgtccgcgctggggattg-aggtttgtaattttccctcatg--aaccaggaatac
ctcgtaagtgc-acgtca-tcaacgtgcgctgaatacgtccytggatcttgtacacaccg
cccgtcgctcctaccgat-tggatgttccggcgagttgtccggactgcgcgcccttagtg
tcgaggcttcggttttcgatacggggcttggggtttgtctgcatcttcgggtgtgggcgc
gctcttgtgcgggaagttccgcgagccttaacatctagaggaaggagaagtcg-taacaa
ggtttcc-----------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>GU827603
----------------------------------tagtgatatgcttcttt--caaagat
t-aagcca-tgcaagtct----agttcaagtgatcac------------ctcggtga---
-acacgaaactgcgataagctcattataaaagt-tagagtgtacaggg-tgcttatccac
aggtgtatag----------tggcttgcc--------acgaacgcttgtatcaacagggt
a-tttcggataactct-ggaaaatctggagctaatacgtgcatgtggtctt---------
------------------------------------------------------------
--------------------cggacccactgtatttatccgctctc--------------
---------------------ggaaccaacctt---------------------------
-----------------------------------------------gtctttcagtttc
ggctgg------gaggcttgtgatgtgaacaag------------gataactca-actga
ccgtt-------------------------------------------------------
------------tctttcgagacggtgcgcccttccactttcttacctatta-actttcg
attgttgtgtag-tggacaacaatggttttgatgggt-acggaggattagggttcgact-
ccggagagtccgccttaaagacggctgacacttccaaggaaggcagcaggcgcgaaaatt
acccaatcgaca----------attg------tcggaggtagtgacgaagaatatcaggc
tcgggagatttta-----------------------------------------------
-tcttccagcttcgaaatggaaggggttaaatc---ataccccttgagaaacta-ctgga
gggcaagatctggtgccagcagccgcggtaataccagct-ccagtagcatatattaaagt
tgctgcagttaaaacgctcgtagttggacttcagggtgcc------aggcgctgagccac
tggaagctt----------tctagtgtg--atgac-----------------------gt
tattagcttg-ttggattgtcgcttcggcgg-----------------------------
-----------------------------------------tgatttggctcg-------
---------------------tgagttgtcttagttca-----------g-gcctcgtgt
gccctacactgtgctctcttttaacttcg-------------------------------
------------------------------------------------------------
--------gttgttagagagtgccagataccttgaggaaattggagtgttcaaggcaagc
ga------------------------------------------------ttattcgcga
ttgaccactgaagcatggaatatcg--------accatgactct-----------tgtca
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------cggc
t------------------------------cgttgg-----------------------
-tttcacgg----------------------cagagtaa---------------------
------------------------------------------------------------
-------------------------tgattaataggagcggt---c-ggggccattggta
tgct-tgcgtgagaggtgaaatttttagaccgcaggcagaccaactactgcgaaagcatt
tggc---aaggacgctttcat-taatcaa-gaacgaaagttgggggatcgaaggcgatta
gacaccaccgtagtccca---gccataaactatgccgactagggattggactttttgtcc
-------------acct-------------------------------------------
------------------------------------------------------------
---------------------------------------ttacaa-tgacacttccagca
cct---------------tatgagaaa-tca---aagtttttgggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------acg
gtcgcaaggctgaaacttaaaggaattgacggag-atcta-cacca--ggtgtggattct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-gacgcggggaagcttaccaggcccagac
a-ttcgaagga-ttgacagattgat-agctctttcatgattgttt-ga-tgagtggtgca
t-ggccgtttttagttcgtggagtgatctgtctgc--tttattgcgataacgaa-cgaga
ccaatacctgctaa-atagc--------------------------------ggttatga
cattcagttgactggatgttgaatt--------------------------gggcatgat
ctgt-----ttgcgacttcattgacttcggttggtggggaaacttatggttcatggctt-
--------ttattcagtgtccaactcggct---------ggcgaaagtgtcgtaattggg
aggtg-----------------------------------------tacccttcgggga-
----------------ttccatcttcttcgc-----------------------------
---------------------------------ttcttagaggga-----ctacttgcgc
-----aag--cgaggggaagttattgg-caacaac--aggtcagggatgccctttagatg
g----tcttgggctgcacgcgtaatacaatggacggttcaacgagctctgattaacgagt
t-ggtaacggag---ttggattcacttactggtcacttc----ggtggttggtaagtcct
a----cttgcagtgctg-gcatccgttgtctccta----gcccgaaggggtatgtgcggt
aaacattggcttttgtc--------tttgtatgctgtgcgtttggggtaatcttgtgaa-
--aaccgtccgcgctggggattg-aggtttgtaattttccctcatg--aaccaggaatac
ctcgtaagtgc-acgtca-tcaacgtgcgctgaatacgtccctggatcttgtacacaccg
cccgtcgctcctaccgat-tgaatgttccggtgagttgtctggactgcgcgcccttagtg
ttatgcttgcg-----taatacggggcttg-----tgattacttgcttgcttgt-----a
gtcactgtgcgggaagttccgcgagccttgacatttagaggaaggagaagtcg-taacaa
ggt---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__AY117419.1_Jakoba_incarcerata_small_subunit_ribosomal_RNA_gene,_complete_sequence
--------------aacctggttgatcctgccagtag-catatgcttgtct--caaagat
t-aagcca-tgcatgtc---tcagtgtaaacac-------------------tagta---
-ttgtgaaactgcgaatggctcattaaatcagt-gataatctctttga-tagtg------
-----------------------cgtggc-------------------------------
--acatggataactgt-gctaactgtagagctaatacatgcccagattcttggatttc--
------------------------------------------------------------
--------------------ggtctaagaagcatttattagattc---------------
----------------------gagccaac------------------------------
--------------------------------------------ctggtgtccttgtggc
atcag--------------tgcggatgaarcat------------aataacttt-gcgaa
tcacagagcccc------------------------------------------------
---------atttatgaggcggtgatgcatcattcgaatctctgccctatca-gcttttg
atggtagtgtcg-tggactaccatggcgataacgggtaacggagaattagggttcgatt-
ccggagagggagcctgagaaatggctaccacatccaaggaaggcagcaggcgcgtaaatt
acccaatcctga-----------ctc------agggaggtagtgaccataaataacgacg
ctcggccttt--------------------------------------------------
-ggtcgtgcgatcggaatgcgagaagttttaag----cccttctcgaa-agcaa-ctgga
gggcaag-tctggtgccagcagccgcggtaataccagct-ccagtagcgtatattaaagt
tgttgcagttaaaaagctcgtagttggatgtcggaaagga------cctccttggtgtcc
gtcactccta---------tgtgagtgttcgtgacc-cagagtgttttaccctttctatt
ttcgactggaatcgggtatgtttttgtgcrtttacttgcacgatg---------------
--------------------------tgc-------------------------------
------------------------------------------------------------
------------ctacacttctccgtaaa-------------------------------
-----------------------------------------------------------a
aagagagtggaacggtttcggtcatgttactgtgaagaaatcagagtgctcaaagcaggc
at------------------------------------------------------ttgt
ccgaatggattagcatgggataacc-------acccttgacctc-----------ggtct
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------ttgg
g------------------------------agttgg-----------------------
-ttcaaaag-atcg------------------atggcgct--------------------
------------------------------------------------------------
-------------------------tgattaataggaacagt---c-gggggcattcgta
ttcc-gaagtcagaggtgaaattcttggattttcggaagacgaacatatgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttcggggatcgaagacgatca
gataccgtcgtagtccga---accataaacgatgccgactagggattggaagatgtgctt
tt----------------------------------------------------------
------------------------------------------------------------
----------------------------------------------gccatctttcagca
cct---------------tccgagaaa-tca---aagtttttgggttccggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaaggaattgacggaw-gggcaccacca--ggagtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacggggaaacttaccaggtccagac
a-taggaagga-tygacagattgac-agctctttcttgattctat-gg-gtggtggtgca
t-ggccgttcttagttggtggagtgatttgtctgg--ttaattccgataacgaa-cgaga
ccttcacctctaa--atagt-------------------------------gtgcatctc
tatacttcytgtgagttg----------------------------agttttggagaaaa
gtgg-----gttcgctcgcaattttcctctctcttact----------------------
------------------------------------------------------------
------------------------------------------------------------
-----tgaacgagatgtttcaattttcacac-----------------------------
---------------------------------ttcttagaggga-----cgatgtgcgt
-----tag--cacaaggaagttggagg-caataac--aggtctgtgatgccctt-agatg
t-----cctgggccgcacgcgtgctacactgacggatccaacaagtttgctatt------
------------------------------------------------------------
---------------------------atgacctg----gaccgaaaggt----------
------------------------------------------ttgggaaatctg-gcaa-
--tgtccgtcgtgatggggatcg-acccttgtaac--ttggtcgtg--aacgaggaattc
cttgtaagcgc-aagtca-tcatcttgcgttgaatacgtccctgccctttgtacacaccg
cccgtcgctcctaccga--tggatggtccggtgaaatcttcggatgttctttaatctttt
tcactcgttgga----------------------------------------------aa
agttagagagcagaagttgattaaactttatcatctagagkaaggagaagtcg-taacaa
ggtttcygtaggtgaacctgcagaaggatca-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__KT388054.1_Paratrimastix_eleionoma_isolate_WL_small_subunit_ribosomal_RNA_gene,_partial_sequence
ccgaattcgtcgacaacctggttgatcctgccagtagtcatatgcttgtct--caaagat
t-aagcca-tgcatgtc---taagtatagcaat--------------------ttta---
-ctgtgaaactgcgaatggctcattataacagt-tatagtttatttga-ttgaaac----
-----------------------cttact-------------------------------
--acatggataaccgt-agtaattctagagctaatacatgcgtaaaggctatgccgcttg
------------------------------------------------------------
-------------------cggtgtagtcggcgcttattaggtac---------------
---------------------aaagccagcaattt-------------------------
-------------------------------------------g-gggtcgcaaggcttc
agatt--------------tgttggtgattcat------------aataactaa-ctgac
cgagg-------------------------------------------------------
------------tctcgtatctcggcgattcattcaaatttctgacctatca-actttcg
atggtaggatag-agacctatcatggttttgacgggtaacggagaattagggttcgatt-
ccggagagggagcctgagagatggctactacttccaaggaaggcagcaggcgcgcaaatt
acccaatctcaa-----------tacacttgagaggaggtagtgacaaaaaatatcaatg
caggtcattttaca----------------------------------------------
-tggcttgtaattggaatggttcaaactcaaat----caattttagagtaccca-ttgaa
gggcaag-tctggtgccagcagccgcggtaattccagct-tcaatagcgtatattaaagt
tgctgcagttaaaaagctcgtagttggatttcggaggagt------tcggttgcggttcg
ggctttcgggcttg----------------------------------------------
-----gacgg-atcgttcttttctacatcacg----------------------------
------------------------------------------------------------
-------------------------------------------------t-tgttttcaa
agacctatcctcctcttcactgagtgggg-------------------------------
------------------------------------------------------------
---------gtagggatttggaggttttactttgaagaaattggagtgttcaaagcaggc
tt---------------------------------------------------aacgcac
ctgaacatattagcatggaataata-------aaataggacgac-----------tattc
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------tatt
t------------------------------tgttgg-----------------------
-tttatagg-attg------------------gtcgtaa---------------------
------------------------------------------------------------
-------------------------tgattaatagggacagt---t-gggggcatttgta
ttat-gtcgtcagaggtgaaattcttggattgacataagacaaactactgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttaggggatcgaaggcgatta
gaaaccgccctagtctta---actataaacgatgccgactcgggatcggagggtgttaaa
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------tcata-tgaccttttcagga
ctg---------------ctagagaaa-tca---aagtctttaggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaagaaattgacggaa-gggcaccacca--ggtgtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacgggaaaacttaccaggtccagac
a-cgggaagga-ttgacagattgat-agctctttcttgattctgt-gg-gtggtggtgca
t-ggccgttcttagttggtggagtgatttgtctgg--ttaattccgttaacgaa-cgaga
ccttgtcctgctat-ataat--------------------------------tactcgtt
ggtca-------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------gcaatgatcaacttggacaat-----------------------------
---------------------------------ttcatagaggga-----ctaccatggt
t---gcac--atgggggaagttctagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgatatcgtcaacaagtaaga----------
------------------------------------------------------------
---------------------------agatcctg----agccgaaaggt----------
------------------------------------------ttgggtaatcttatgag-
--tcgttatcgtgatggggattg-atctttgtaattatggatcatg--aacgaggaatac
ctagtaagcgc-atgtca-tcagcatgcgttgattacgtccctgccctttgtacgcaccg
cccgtcgctcctaccgat-tgaatgatccgatgaaatgtttggattgtctgactgcgacc
tcgcaaggggtt------------------------------------------------
gtggtcggatgagaagaacagtgaatcttatcatttagaggaaggagaagtcg-taacaa
ggtttccgtaggtgaacctgcagaaggatcaagcttggatcccggg--------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__KT388048.1_Paratrimastix_pyriformis_isolate_KIZILLAR_small_subunit_ribosomal_RNA_gene,_partial_sequence
----------------------------------tagtcatatgcttgtct--caaagat
t-aagcca-tgcatgtc---taagtatagcaat---------------------ata---
-ctgtgaaactgcgaatggctcattatatcagt-aatagtttatttga-tagtacc----
------------------------ttact-------------------------------
--acatggataaccgt-agtaattctagagctaatacatgcgcaaaatcctgactcgtaa
------------------------------------------------------------
--------------------gggaagggatgtatttattagatca---------------
---------------------aaaaccaat--cgc-------------------------
-------------------------------------------g-tcctcgcaagggggc
gtgtc--------------ctttggtgattcat------------aataactga-tcgaa
tcgaa-------------------------------------------------------
------------ggcttgccttcgatgtatcattcaaatttctgccctatca-actttcg
atggtaggatag-aggcctaccatggttttgacgggtaacggagaattagggttcgatt-
ccggagagggagcctgaaagatggcgactacttccaaggaaggcagcaggcgcgcaaatt
acccaatcccaa-----------tacac---tggggaggtagtgacaaaaaatatcaatg
cagggtgattacgt----------------------------------------------
-cattctgtaattggaatgggccgaacttaaat----aattcggcgagtatcaa-ttaga
gggcaag-tctggtgccagcagccgcggtaattccagct-ctgatagcgtatactaaagt
tgctgcagttaaaaagctcgtagttgaaccttggaggagt------tatgctgcggtcac
tgggtttcg-------------------------------------------------gc
ttggtgacgg-gtgtttctcttctccatcaca----------------------------
------------------------------------------------------------
-------------------------------------------------------ttcga
agactcatcttcctcttaactgagtggag-------------------------------
------------------------------------------------------------
---------gtgaggattcggagcctttactttgaagaaattggagtgttcaaagcaggc
tt---------------------------------------------------gatgcaa
ttgaacatttaagcatggaataata-------aaataggacgat-----------tgcct
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------tatt
t------------------------------tgttgg-----------------------
-ttttcgag-a-cg------------------atcgtaa---------------------
------------------------------------------------------------
-------------------------tgattaatagggacagt---t-gggggcattcgta
ttac-gtcgtcagaggtgaaattcttggattgacgtaagacgaactactgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttaggggatcgaaggcgatta
gaaaccgccctagtccta---accataaacgatgccgactcagtattggaggggcttcca
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------aa-cgaccctttcagca
ctg---------------ctagagaaa-tca---aagtctctgggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaagaaattgacggaa-gggcaccacca--ggtgtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacggggaaacttaccaggtccagac
a-caggaagga-ttgacagattgat-agctctttcttgattctgt-gg-gtggtggtgca
t-ggccgttcttagttggtggagtgatttgtctgg--ttaattccgataacgaa-cgaga
cctcagccggctaa-atagc--------------------------------cacactcg
ccctt-------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------cggggcgggtgcctattcgcggc-----------------------------
---------------------------------ctcttagaggga-----ctaccagggt
c---gcac--ctggtggaagtttgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgacgccgtcaacaagc--------------
------------------------------------------------------------
---------------------------tcatcctg----ggccgaaaggt----------
------------------------------------------ttgggtaatctt-tgaa-
--acggcgtcgtgatggggattg-atctttgtaattattgatcatg--aacgaggaatac
ctagtaagcgc-aagtca-tcagcttgcgttgattacgtccctgccctttgtacacaccg
cccgtcgctcctaccgat-tgaatgatccgatgaaatgcttggactgtctggctgcagct
gcgcaagcggcc------------------------------------------------
gtggttgggcgggaagagcagtgaatcttatcatttagaggaaggagaagtcg-taacaa
ggtttcc-----------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__NG_017166.1 Allomyces arbuscula strain Brazil 2 18S ribosomal RNA, partial sequence
-----------------------------------agtcatatgcttgtct--aaaagat
t-aagcca-tgcatgtc---taagtataaactg------------------tttatac--
-aagtgaaactgcgaatggctcattaaatcagt-tataatttatttga-tagtaccct--
-----------------------tttact-------------------------------
--acttggataaccgt-ggtaattctagagctaatacatgcacaaaagtcctgaccttta
------------------------------------------------------------
--------------------cggaagggatgcagttattagatac---------------
---------------------aaaaccaac------------------------------
---------------------------------------------------ccgggcaac
cggtt--------------ttttggtgattcat------------gataacttt-gcgga
ccgcatggc---------------------------------------------------
------------cttgcgccggcggcgggtcattcaaatttctgccctatca-actgtcg
atggtaggatag-aggcctaccatggtgataacgggtaacggggaattagggttcgatt-
ccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaatt
acccaatcctga-----------tac------agggaggtagtgacaataaataacgatg
caggaccttatg------------------------------------------------
-gtctttgcaattggaatgagtacaatttaaat----cccttaacgaggaacaa-ttgga
gggcaag-tctggtgccagcagccgcggtaattccagct-ccaatagcgtatattaaagt
tgttgcagttaaaaagctcgtagttgaatttcaagggttt------ttttcgtagctagc
cattgttccctttg--------------------------------------cggtcaat
gtgcatttgg-ctacaggccctttt-----------------------------------
------------------------------------------------------------
--------------------------------------------------------tttc
tgctaggagatgcggctcttctgcttgtc-------------------------------
-----------------------------------------------------------a
gcggggctgcagttttcctagcacttttactttgaaaaaattagagtgttcaaagcaggc
ttt-------------------------------------------------ttctttgc
ctgaatatcttagcatggaataata-------gaataggacttt-----------ggttc
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------tatt
t------------------------------tgttgg-----------------------
-tttctagg-a-ct------------------agagtaa---------------------
------------------------------------------------------------
-------------------------tgattaatagggatagt---t-gggggcattagta
ttta-attgtcagaggtgaaattcttggatttaggaaagactaacttctgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttaagggatcgaagatgatta
gataccatcgtagtctta---accataaacgatgccgaccagggatcgggcgcttgtagt
tt----------------------------------------------------------
------------------------------------------------------------
-------------------------------------ttccaaaa-agacacgcccggca
cct---------------tttgagaaa-tca---aagtttttgggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaaggaattgacggaa-gggcaccacca--ggagtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacggggaaactcaccaggtccagac
a-tggtaagga-ttgacagattgaa-agctctttcttgattctat-gg-gtggtggtgca
t-ggccgttcttagttcgtggattgatttgtctgg--ttaattccgataacgaa-cgaga
ccttttcctactcg-ttact--------------------------------tgctcatg
ggttttat----------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------ctcatggcacgcaag-----------------------------
---------------------------------ttcttagcggga-----ctgctggcgt
t----tag--ccagaggaagttcgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgatgcagtcagcaagttttttaactggctg
c-----------------------------agytctttc----gggagctg---------
---------------------tggtcgatttcctt----gcccgaaaggg----------
------------------------------------------ttgggtaatcttttgaa-
--actgcatcgtgatggggatcg-acctttgtaattatcggtcgtg--aacgaggaattc
ctagtaagtgt-gggtca-tcagcccacgctgattacgtccctgccctttgtacacaccg
cccgtcgctactaccgat-tggatggcttagtgagatttttggattgttgagcgattgca
gcaatgtga---------------------------------------------------
-acgcccgacgagaaattgatcaaacttggtcatctagaggaagtaaaagtcg-taacaa
ggtttccgtaggtgaacctgcggaaggatcatta--------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__AJ852533.1 Glomus sp. MUCL 41835 18S rRNA gene, strain MUCL 41835
tg-----------------------------ctg---------------tt--caaagat
t-aagcca-tgcatgtc---taagtataaatcg-----------------tttaaac---
-aggtgaaactgcgaatggctcattaaatcagt-tataatttatttga-tagtacc----
------------------------ttact-------------------------------
--acttggataaccgt-ggtaattctagagctaatacatgctaaaacctccgacttct--
------------------------------------------------------------
--------------------ggaagggggtgtatttattagataa---------------
---------------------aaaaccaat------------------------------
--------------------------------------------------atcgggcaac
cgatt-------------cccttggtgattcat------------aataacttt-tcgaa
tcgtatgac---------------------------------------------------
------------tttacgtcgacgatgaatcattcaaatttctgccctatca-actttcg
atggtaggatag-aggcctaccatggtggtaacgggtaacggggtgttagggcacgaca-
ccggagagggagcctgagaaacggctaccacatccaaggatggcagcaggcgcgcaaatt
acccaatcccga-----------cac------ggggaggtagtgacaataaataacaata
cgggttctttcg------------------------------------------------
-gatctcgtaattggaatgagtacaatttaaat----ctcttaacgaggaacaa-ttgga
-ggcaag-tctggtgccagcagccgcggtaattccagctcccaatagcgtatattaaagt
tgttgcagttaaaaagctcgtagttgaatttcggggttag------taggttggtcatgc
ctctggtat-------------------------------------------------gt
actggtctca-ctgattcctccttc-----------------------------------
------------------------------------------------------------
--------------------------------------------------------ctta
tgaaccgtaatgccattaatttggtgttg-------------------------------
------------------------------------------------------------
----------cggggaatttggactgttactttgaaaaaattagagtgtttaaagcaggc
ta------------------------------------------------------acgc
ttgaatacattagcatggaataatg-------aaataggacgtt----------cgatct
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------tatt
t------------------------------tgttgg-----------------------
-tttctagg-a-tt------------------gacgtaa---------------------
------------------------------------------------------------
-------------------------tgattaatagggatagt---t-gggggcattagta
ttca-attgtcagaggtgaaattcttggatttattgaagactaactagtgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttaggggatcgaagacgatca
gataccgtcgtagtctta---accataaactatgccgactagggatcggatgatgttaat
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------tttttaa-tgactcattcggcg
cct---------------tacgggaaa-cca---aagtgtttgggttccggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaaggaattgacggaa-gggcaccacca--ggggtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacggggaaactcaccaggtccagac
a-tagtaagga-ttgacagattgag-agctctttcttgattctat-gg-gtggtggtgca
t-ggccgttcttagttggtggagtgatttgtctgg--ttaattccgttaacgaa-cgaga
ccttaacctgctaa-atagc--------------------------------taggccta
acat--------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------tgttaggtcgccagc-----------------------------
---------------------------------ttcttagaggga-----ctatcggtgt
t----taa--ccgatggaagtttgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgatgaagtcatcgagttc------------
------------------------------------------------------------
---------------------------atttcctt----tatcggaagat----------
------------------------------------------atgggtaatcttttgaa-
--acttcatcgtgctggggatag-agcattgcaactattgctcttg--aacgaggaatcc
ctagtaagtac-aagtca-ctagcttgtgctgattacgtccctgccctttgtacacaccg
cccgtcgctactaccgat-tgaatggcttagtgaggccttcggattgagattaggaaact
ggcaacagact-------------------------------------------------
-cctggttttgaaaagttggacaaacttggtcatttagaggaagtaaaagtcg-taacaa
ggtttccgtaggtgaacctgcggaaggatcattaccgattttagcggacctgatctctga
tcatggtct---------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------cgcgaaaac
>OUTGROUP__AY032608.1 Chytridium polysiphoniae 18S ribosomal RNA gene, partial sequence
----------------------------------tagtcatatgcttgtct--caaagat
t-aagcca-tgcatgtc---taagtgtaaacaa-----------------atttata---
-ctgtgaaactgcgaatggctcattaaatcagt-tatagtttatttga-tagtacc----
------------------------ttact-------------------------------
--acttggataaccgt-ggtaattctgcagctaatacatgcaacaaatcccgacttttt-
------------------------------------------------------------
--------------------tggaagggacgtacttattagattt---------------
----------------------aagccaac------------------------------
---------------------------------------------------ccgggcaac
cggat--------------tttaggtgattcat------------gataatttt-tcgaa
tcgtatggc---------------------------------------------------
------------tttgtgccgacgatggttcattcaaatttctgccctatca-actttcg
atggtaggatag-aggcctaccatggttttaacgggtaacggagaattagggttcgatt-
ccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaatt
acccaatcctga-----------cac------agggaggtagtgacaataaataacaata
caggactcttacg-----------------------------------------------
-agtcttgtaattggaatgagtacaatttaaat----ctcttaacgagtaacaa-ttgga
gggcaag-tctggtgccagcagccgcggtaattccagct-ccaatagcgtatattcaagt
tgttgcagttaaaaagctcgtagttgaattttggatctgg------ccaagtggtttggg
cgcaagctca------------------------------------------------ac
actgctttgg-ctgggtctattctt-----------------------------------
------------------------------------------------------------
--------------------------------------------------------ttgg
ggaattaaggtgctatttatttagtgcct-------------------------------
------------------------------------------------------------
----------tagggaaccaaaactgttactttgaaaaaattagagtgtttaaaacaggc
tt------------------------------------------------------atgc
ttgaatacattagcatggaataacg-------gaataggacttt-----------gtttc
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------tatt
t------------------------------tgttgg-----------------------
-tttgagaa---at------------------gaagtaa---------------------
------------------------------------------------------------
-------------------------tgattaatagggacagt---t-gggggcattagta
ttcc-attgtcagaggtgaaattcttggatttatggaagactaacttctgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttaggggatcgaagacgatca
gataccgtcgtagtctta---accataaactatgccgactagggatcggacaatgttaca
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------attat-tgacttgttcggca
cct---------------tatgagaaa-tca---aagtttttgggttccggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaaggaattgacggaa-gggcaccacca--ggagtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacgggaagactcaccaggtccagac
a-tagtaagga-ttgacagattgag-agctctttcttgattctat-gg-gtggtggtgca
t-ggccgttcttagttggtggagtgatttgtctgg--ttaattccgataacgaa-cgaga
ccttaacctgctaa-atagt--------------------------------tacgttaa
caatt-------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------gttgacggttttaac-----------------------------
---------------------------------ttcttagaggga-----ctattgatgt
t----taa--tcaatggaagtttgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgatgaaggcaacaagtaat-----------
------------------------------------------------------------
---------------------------ttcacctt----ggccggaaggt----------
------------------------------------------ctgggtaatcttttgaa-
--acttcatcgtgctggggatag-agcattgcaattattgctcttc--aacgaggaattc
ctagtaagcgt-gagtca-tcagctcgcgttgattacgtccctgccctttgtacacaccg
cccgtcgctactaccgat-tgaatggcttagtgagacctccggattgataatttagcgga
agcaattctgc-------------------------------------------------
-ttttttgtcgagaagctggtcaaacttggtcatttagaggaagtaaaagtcg-taacaa
ggtaaccgta--------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__AY601707.1 Rozella sp. JEL347 isolate AFTOL-ID 16 18S ribosomal RNA gene, partial sequence
------------------------------------------------------------
------------atgtc---taagtataaatga-------------------tttta---
-cagtgaaactgcgaatggctcattaaatcagt-tataatttatttga-tattaac----
------------------------ttact-------------------------------
--acttggataaccgt-ggtaattctagagctaatacatgcatcaaaacccgacttc---
------------------------------------------------------------
--------------------tggaagggttgtatttattagataa---------------
---------------------aaaaccaat------------------------------
---------------------------------------------------gcgggtaac
cgctt--------------ctttggtgattcat------------agtaacttt-tcgaa
tcgtatggc---------------------------------------------------
------------cttgtgctgacgatggttcattcaaatttctgccctatca-actttcg
atggtaggatag-aggcctaccatggttttaacgggtaacggagaattagggttcgatt-
ccggagagggagcctgagaaacggctaccacttctacggaaggcagcaggcgcgcaaatt
acccaatggtga-----------cac------accgaggtagtgacaataaataacaatg
caagtccttat-------------------------------------------------
-ggaattgcaattggaatgagaacaatttaaat----cccttatcgagcaacaa-ttgga
gggcaag-tctggtgccagcagccgcggtaattccagct-ccaatagcgtatgttaatgc
tgttgcagttaaaacgttcgtagttgaatttcgaatgagg------cattggtctcccct
cacggggctg--------------------------------------------------
---aactttg-ctgagttcttcctt-----------------------------------
------------------------------------------------------------
--------------------------------------------------------ctgg
gcattcaaggtgctctttactgggtgcct-------------------------------
------------------------------------------------------------
-----------tgaaaaccagaacgtttactttgaaaaaattagagtgtttaaggcaggc
tt------------------------------------------------------atgc
ttgaatacattagcatggaataata-------gaataggacttt-----------ggttc
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------tatt
t------------------------------tgttgg-----------------------
-tttttaga-a-cc------------------gaggtaa---------------------
------------------------------------------------------------
-------------------------tgattaatagggacagt---t-gggggcattagta
ttgtggcagtcagaggtgaaattcttagatttgtccaagactaacaactgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttaggggatcgaagacgatta
gataccgtcgtagtctta---accataaactatgccgactagggatcggtgaagtacatt
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------tta-tgacttcatcggca
cct---------------tatgagaaa-tca---aagtttttgggttctggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaaggaattgacggaa-gggcaccacca--ggagtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacgggaaaactcaccaggtccggac
a-tagtaagga-ttgacagattgag-agctctttcttgattctat-gg-gtggtggtgca
t-ggccgttcttagttggtggagtgatttgtctgg--ttaattccgataacgaa-cgaga
ccttaacctgctaa-atagt--------------------------------cacgcgaa
cctc--------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------gtgttcgtggccgac-----------------------------
---------------------------------ttcttagaggga-----ctatccgttt
t----tag--cggaaggaagtttgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggctgcacgcgcgctacactgatgaggtcagcgagtat------------
------------------------------------------------------------
---------------------------ataacctt----gaccgaaaggt----------
------------------------------------------ttgggtaatcttttgaa-
--acttcatcgtgctggggatag-accattgcaattattggtcttc--aacgaggaattc
ctagtaagcgt-gagtca-tcagctcacgttgattacgtccctgccctttgtacacaccg
cccgtcgctactaccga--tgaatggcttagtgagacccccgaattgtgtccattatcag
caatgat-----------------------------------------------------
-tttggatgtgagaagttggtcaaacttggtcatttagaggaagtaaaagtcg-taacaa
ggtttccgtaggtgaacctgcggaaggatcatta--------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>OUTGROUP__AY965870.1_Andalucia_godoyi_isolate_AND28_18S_ribosomal_RNA_gene,_partial_sequence
-------------------ggttgatcctgccagtagtcatatgcttgtct--caaagat
t-aagcca-tgcatgtc---taagaataagggc-------------------attga---
-gcccgaatctgcgaacggctcattaaacaagc-tataatttatttga-tagtggt----
-----------------------gattgc-------------------------------
--acatggataactgt-gctaactgtagagctaatacatgcagacaattccgtgt-----
------------------------------------------------------------
--------------------catgcggaatgcatttattagatac---------------
----------------------aaaccaac------------------------------
---------------------------------------------------ccgggcaac
cgg----------------cgcggaggaatcat------------aataactagagcgaa
tcgcatgcc---------------------------------------------------
------------ctcgtggcggcgatgcatcattcaaatttcttccctatca-gcttttg
acggtagtgtag-tggactaccgtggcggtaacgggtaacggagaattagggttcgatt-
ccggagagggagccttaaaaatggctaccacaactaaggttggcagcaggcgcgcaactt
actgactctcaa-----------ttc------gaggaagtagtgacaataaataacgccg
cggggcccatcg------------------------------------------------
-ggcttcgcgagtggaatgagaacaatttaaat----cccttatcgaa-agcaa-ctgga
gggcaag-tctggtgccagcagccgcggtaattccagct-ccagtagcgtatattaaaat
tgttgcagttaaaaagctcgtagttggactttggaagggc------gccgtgggtccgct
tcggttaga-------------------------------------------------gg
tgtgcacccaacggttggcggcgtcgggcaaccggcgtcgt-------------------
------------------------------------------------------------
-------------------------------------------------c-gttagcccg
tcctttaggtcgaggctctccaggttccgctgctggc-----------------------
--------------------------------------------c-gcaaggttagccgg
gcttgggccaaagggcgtcggccgcgttactgtgaaagaatcagagtgttcaaagcaggc
gtg-----------------------------------------------------ttgc
ctgaatggattagcatggaataaca-------acgaacgactcc-----------ggtct
agt---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------tgttgg-----------------------
-tttaaggc---cg-----------------cgaggcac---------------------
------------------------------------------------------------
-------------------------tgattaatagggacagt---t-gggggcattcgta
ttcc-gtagtcagaggtgaaattcttggatttacggaagacgaacttatgcgaaagcatt
tgcc---aaggatgttttcat-taatcaa-gaacgaaagttcggggatcgaagatgatta
gataccgtcgtagtccga---accataaacgatgccgactagggattggaggatgttcca
at----------------------------------------------------------
------------------------------------------------------------
---------------------------------------caaata-cgactccttcagca
cct---------------tatgagaaa-tca---aagtctttgggttccggggggagt--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------atg
gtcgcaaggctgaaacttaaaggaattgacggaa-gggcaccacca--ggagtggagcct
gcggct------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------taatttgactc-aacacggggaaacttaccaggtccagac
a-tggggagga-ttgacagattgat-agctctttcttgattctat-gg-gtggtggtgca
t-ggccgttcttagttggtggattgatttgtctgg--ttaattccgataacgaa-cgaga
ccttaacctactaa-ctagg--------------------------------tggacgat
tttcg-------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------aatcgctcctcc-----------------------------
---------------------------------ttcttagaggga-----caatgtgtgg
c----aaa--cacatggaagtttgagg-caataac--aggtctgtgatgccctt-agatg
t-----tctgggccgcacgcgcgctacactgacggatgcagcaagtacagctccgcaagg
a-----------------------------------------------------------
---------------------------cgatcctt----ggccgaaaggt----------
------------------------------------------ctgggcaatctt-tgaa-
--cgtccgtcgtgatgggga-ag-acccttgcaattattggtcttc--aacgaggaattc
cttgtaagcgc-aagtca-tcaacttgcgttgaatacgtccctgccctttgtacacaccg
cccgtcgctcctaccgat-tggatggtccggtgaactcttcggatcgagctggtcgactg
gtctccag-------------------------------------------------ccg
tgncagtttcgagaagttgagtaaactttatcatctagaggaaggagaagtcg-taacaa
ggtttccgtaggtgaacctgc---------------------------------------
---------c--------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>AB263123_1
----------------------------------tagtcatatgctaatct--caaagat
t-aagcca-tgcatgtc---taagtataagctc------------------gcttta---
-cggcgaaactgcgaacagctcattacaacagt-tataatttatttga-tggtcct----
------------------------ttactg------------------------------
--gtcggcataacact-ggtaaatctagagctaatacgttctct----------------
------------------------------------------------------------
--------------------gcttcggcaggcatttgttagcggtt--------------
---------------------aaagccaac------------------------------
---------------------------------------------------gtggacttc
ggtcc------------tcttaaggtgaaacta------------gacaactta-gcgga
tcact-------------------------------------------------------
--------------cttctgggtgacagatcattcaaatttctgccctatca-actttcg
attgtaggatag-aggcctacaatggtgatgacgggtaacggaggattagggtttgact-
ccggagaatgagcctgagagacggctcatacttccaaggaaggcagcaggcgcgaaaatt
acccaatgcaca-----------ttg------tgcgaggtagtgacgagaaatagcgggg
ccttagtcttttg-----------------------------------------------
-acagaggccattgcaatgagtacaacctaaaa----aacttaacgagcagcaa-ctgga
gggcaag-tctggtgccagcagccgcggtaattccagct-ccagtagcatatactaaaat
tgttgcagttaaaaagctcgtagttgaatatcagggtgag------cggctcgcttcggc
ggg---------------------------------------------------------
-----------ctaagcttgtcctt-----------cttgc-------------------
------------------------------------------------------------
------------------------------------------------------------
------------gtgtgtttcggtcttcg-------------------------------
------------------------------------------------------------
--------gattgggacgtgcgcactttaccatgaggaaattggagcgttcaaagcaggt
tc----------------------------------------------------attctg
ttgaacataccagcatggaatatcg-------ggacaagacttc-----------ggtct
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------ctgtt