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Many thanks for you interest and work on this. One of the advantages of the finalfit dataframe is that it can be edited on the fly. So rather than adding extra options to the original functions, I've added a quick helper function ff_remove_ref which will remove the rows for you. It should work with all flavors of regression and factor levels.
You can install the github version of finalfit to access this.
Altering the OR plot can be done in a similar manner. This isn't as straightfoward and some examples will be added to future vignettes. A new "factorlist" object is created only containing the levels of interest, which is then passed to or_plot().