-
Notifications
You must be signed in to change notification settings - Fork 0
/
setup.py
executable file
·132 lines (118 loc) · 4.38 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
# This software is Copyright (c) 2015,
# The Regents of the University of California.
#
# Developed by the UCSD CFAR BIT Core (bitcore@ucsd.edu)
#
# Core Developers:
# Sergei L Kosakovsky Pond (spond@ucsd.edu)
# Jason A Young (jay007@ucsd.edu)
# Marco A Martinez (mam002@ucsd.edu)
# Steven Weaver (sweaver@ucsd.edu)
# Zachary Smith (z4smith@ucsd.edu)
#
# Significant contributions from:
# David Mote (davidmote [at] gmail [dot] com)
# Jennifer Rodriguez-Mueller (almostlikethat [at] gmail [dot] com)
# Drew Allen (asallen@ucsd.edu)
# Andrew Dang (a7dang [at] gmail [dot] com)
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
"""
Package installation configurations.
See README.rst for more information on how to install this package.
"""
import os
from setuptools import find_packages, setup
from subprocess import Popen, PIPE
HERE = os.path.abspath(os.path.dirname(__file__))
def get_version():
version_file = os.path.join(HERE, 'VERSION')
# read fallback file
try:
with open(version_file, 'r+') as fp:
version_txt = fp.read().strip()
except:
version_txt = None
# read git version (if available)
try:
version_git = (
Popen(['git', 'describe'], stdout=PIPE, stderr=PIPE, cwd=HERE)
.communicate()[0]
.strip())
except:
version_git = None
version = version_git or version_txt or '0.0.0'
# update fallback file if necessary
if version != version_txt:
with open(version_file, 'w') as fp:
fp.write(version)
return version
setup(
name='avrc.redcross',
version=get_version(),
description='Red Cross Test Result Processing Pipeline',
classifiers=[
'Development Status :: 4 - Beta'
'Programming Language :: Python',
'Topic :: Database',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Information Analysis',
'Topic :: Scientific/Engineering :: Medical Science Apps.',
'Topic :: Software Development :: Libraries',
'Topic :: Utilities',
],
keywords='AVRC BEAST BIT datastore database sqlalchemy relational '
'redcross hiv test result pipline',
author='UCSD CFAR BIT Core Team',
author_email='bitcore@ucsd.edu',
url='http://bitbucket.org/ucsdbitcore/avrc.redcross',
license='BSD 2-clause "Simplified" License',
packages=find_packages('src', exclude=['ez_setup']),
package_dir={'': 'src'},
namespace_packages=['avrc'],
include_package_data=True,
zip_safe=False,
install_requires=[
'setuptools',
'alembic',
'argparse',
'mako',
'requests',
'python-gnupg',
'SQLAlchemy',
'tabulate',
'TurboMail',
'Werkzeug',
'xlutils'
],
extras_require={
'test': ['nose', 'unittest2', 'coverage', 'beautifulsoup4', 'httmock'],
},
entry_points="""
[console_scripts]
rc_initdb = avrc.redcross.scripts.initdb:main
rc_parse = avrc.redcross.scripts.sync_cts:main
rc_sync = avrc.redcross.scripts.sync:main
rc_remind = avrc.redcross.scripts.remind:main
""",
)