Native Rmarkdown kernel for Jupyter ![b-CI]

LICENSE: MIT

Requirements

• Jupyter.
• A current R installation.

Installation

This package is not available on CRAN. You can install with remotes:

remote::instal_github('facebookexperimental/Rmdkernel')
Rmdkernel::installspec()  # to register the kernel in the current R installation

Per default Rmdkernel::installspec() will install a kernel with the name “rmarkdown” and a display name of “Rmarkdown”. Multiple calls will overwrite the kernel with a kernel spec pointing to the last R interpreter you called that commands from. You can install kernels for multiple versions of R by supplying a name and displayname argument to the installspec() call (You still need to install these packages in all interpreters you want to run as a jupyter kernel!):

# in R 3.3
Rmdkernel::installspec(name = 'rmd33', displayname = 'R 3.3')
# in R 3.2
Rmdkernel::installspec(name = 'rmd32', displayname = 'R 3.2')

By default, it installs the kernel per-user. To install system-wide, use user = FALSE. To install in the sys.prefix of the currently detected jupyter command line utility, use sys_prefix = TRUE.

Now both R versions are available as an Rmarkdown kernel in the notebook.

Running the notebook

If you have Jupyter installed, you can create a notebook using Rmdkernel from the dropdown menu.

You can also start other interfaces with an R kernel:

# “rmarkdown” is the kernel name installed by the above `Rmdkernel::installspec()`
# change if you used a different name!
jupyter qtconsole --kernel=rmarkdown
jupyter console --kernel=rmarkdown

How does it know where to install?

The Rmdkernel does not have any Python dependencies whatsoever, and does not know anything about any other Jupyter/Python installations you may have. It only requires the jupyter command to be available on $PATH. To install the kernel, it prepares a kernelspec directory (containing kernel.json and so on), and passes it to the command line jupyter kernelspec install [options] prepared_kernel_dir/, where options such as --name, --user, --prefix, and --sys-prefix are given based on the options.