oudated usage of run_farseer in main.py

[joaomcteixeira]

in main.py it reads

from current.farseermain import read_user_variables, run_farseer
        fsuv, cwd = read_user_variables(spectrum_path)
        run_farseer('{}/spectra'.format(cwd), fsuv)

run_farseer() from farseermain.py now takes only one argument, fsuv, as returned from read_user_variables() that takes only the path argument

[joaomcteixeira]

could you tell me which value would take
spectrum_path in line 105 of main.py ?
is it ..../spectra ?

[skinnersp]

no, it's the path where the spectra folder should be created. In current.setup_farseer_calculation.py, the create_directory_structure function takes the path and appends /spectra/ to it before creating the structure that farseer requires. We can of course change this so that the path has to end in spectra, it's a simple change to line 4 of current.setup_farseer_calculation.py,

[joaomcteixeira]

no need to change anything. is already compatible with read_user_variables function call.
I have created a branch and solve this in the branch, is very little changes.