HuBMAP + HPA - Hacking the Human Body

This repository contains my code for the 2022 HuBMAP + HPA - Hacking the Human Body Competition hosted on kaggle.

Libraries used in this repository:

• MONAI is used for image loading, data transformation and efficient dataset and datalaoder generation.
• Segmentation Models Pytorch for their intuitive approach of generating state-of-the-art segmentation models.
• Catalyst for simple and flexible model training.
• A few components from fastai, some transformations from albumentations and PyTorch.

Repository structure:

root
  - data
    - ...
  - logs
    - exp_01
    - exp_02
    - ...
  - nbs
    - exp_01
    - exp_02
    - ...

Only the code is provided here.