- Global Biodiversity Information Facility (GBIF) Species occurrence data rgbif - SENT
- Dryad Repository for published data sets rdryad - SENT
- eBird Global tools for birders, critical data for science rebird - SENT
- BEF Data Portal Data from the forest Biodiversity and Ecosystem Functioning (BEF) experiment rbefdata - SENT
- OpenFisheries database A platform for aggregating global fishery data rfisheries - SENT
- Mendeley Mendeley is a free reference manager and academic social network RMendeley - SKIPPING
- World Bank Climate Data World Bank climate data used in the World Bank rWBclimate - SKIPPING
- Treebase Repository of user-submitted phylogenetic trees and data to generate them treeBASE - SENT
- Fishbase A Global Information System on Fishes rfishbase - SENT
- USA National Phenology Network Repository of phenology data rnpn - SENT
- Encyclopedia of Life (EOL) Global access to knowledge about life on Earth taxize
- Integrated Taxonomic Information Service (ITIS) Taxonomic information on plants, animals, fungi, and microbes of mostly North America taxize - SENT
- openSNP.org Repository of SNP data rsnps - SENT
- Biodiversity Heritage Library Making biodiversity literature openly available to the world rbhl - SENT
- Datacite Metadata on datasets rdatacite - SENT
- from datacite: I could offer you a list of all deposit timestamps (~1.6M). You can count, aggregate, or group them on your end with any granularity you need. API call is as follows (results list is unsorted!): http://search.datacite.org/api?q=*&fl=uploaded&wt=csv&csv.header=false&fq=has_metadata:true&rows=99 , Just increase the row count (e.g. to 9999999) to get all records.
- Figshare Repository of research outputs (papers, figures, datasets) rfigshare - SENT
- VertNet Vertebrate specimen data rvertnet - SENT
- Theplantlist dot org Working list of all known plant species taxize - SENT
- They said the plant list is mostly static, but kew plant list and another they manage do grow, so will get data on those from them
- Neotoma Databases of paleoecological data neotoma - SENT
- uBio Indexing & Organizing Biological Names taxize - SENT
- Tropicos (from Missouri Botanical Garden) Nomenclatural data from the Missouri Botanical Garden taxize - SENT
- Catalogue of Life List of the world's known species of animals, plants, fungi and micro-organisms taxize - SENT
- NOAA climatic data NOAA climatic data rnoaa - SENT
- dbSNP NCBI SNP repository rsnps - SENT
- Plantminer Web app built to make the search and processing of plant taxonomic data easier taxize - AN AGGREGATOR, DON'T SEND
- Pubmed Full-text and metadata - rpubmed/rentrez
- Europe PubMed Central Free information resource for biomedical and health researchers - rebi
- Pensoft Full-text and metadata rpensoft
- Hindawi Full-text and metadata rhindawi
- eLife Full-text and metadata elife - USE API TO GET NO. ARTICLES
- Public Library of Science (PLOS) Full-text and metadata from rplos - I THINK I CAN GET IT VIA THE SEARCH API???
- Phylomatic Get a phylogeny for a given species list taxize - STATIC, JUST LOOK AT SITE, HOW MANY SPECIES?