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util.py
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util.py
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import sys
from typing import List, Tuple, Dict, Union, Optional, Callable, Any
import numpy
import numpy as np
#from scipy import linalg as sp_linalg
import math
import csv
import time
import copy
import random
import statistics
from tqdm import tqdm
from nats_bench import create
from nats_bench.api_topology import NATStopology
from nats_bench.api_utils import ArchResults
from cython_wl_kernel import cython_wl_kernel_ as wl_kernel
import sys
#sys.path.append('/home/rio-hada')
#import workspace.util.debug as my
DATASET = 'ImageNet' # とりあえず定数
# 未使用
ADJACENT_MATRIX: np.ndarray = np.array([
[0, 1, 1, 0, 1, 0, 0, 0],
[0, 0, 0, 1, 0, 1, 0, 0],
[0, 0, 0, 0, 0, 0, 1, 0],
[0, 0, 0, 0, 0, 0, 1, 0],
[0, 0, 0, 0, 0, 0, 0, 1],
[0, 0, 0, 0, 0, 0, 0, 1],
[0, 0, 0, 0, 0, 0, 0, 1],
[0, 0, 0, 0, 0, 0, 0, 0],
], dtype='u1')
NEXT_NODES: List[List[int]] = [
[1, 2, 4],
[3, 5],
[6],
[6],
[7],
[7],
[7],
[]
]
class HyperParam:
def __init__(
self,
T: int,
P: int,
B: int,
D: int,
gpu: bool = False,
recalc_freq: int = 1,
k_size_max: Optional[int] = None,
select_mode: str = 'random',
mean0: bool = False,
eval_length: Optional[int] = None,
seed: Optional[int] = None,
eval_freq_srcc: Optional[int] = None,
eval_archs_srcc: Optional[int] = None
):
self.T = T
self.P = P
self.B = B
self.D = D
self.gpu = gpu
self.recalc_freq = recalc_freq
self.k_size_max = k_size_max
self.select_mode = select_mode
self.mean0 = mean0
self.eval_length = eval_length
self.seed = seed
self.eval_freq_srcc = eval_freq_srcc
self.eval_archs_srcc = eval_archs_srcc
class Cell:
# (i, j) <=> (Node_i -> Node_j)
OPS = ["none", "skip_connect", "nor_conv_1x1", "nor_conv_3x3", "avg_pool_3x3"]
OP_TO_INDEX: Dict[str, int] = dict(map(lambda kv: kv[::-1], enumerate(OPS)))
def __init__(self, arch_str: str, accuracy: Dict[str, float], flops: Dict[str, float], index: int):
self.arch_str = arch_str
self.arch_matrix: np.ndarray = NATStopology.str2matrix(self.arch_str).astype('u1')
self.accuracy = accuracy
self.main_accuracy = accuracy[DATASET]
self.flops = flops
self.index = index
self.label_list: List[int] = [
0,
self.arch_matrix[1, 0] + 1,
self.arch_matrix[2, 0] + 1,
self.arch_matrix[2, 1] + 1,
self.arch_matrix[3, 0] + 1,
self.arch_matrix[3, 1] + 1,
self.arch_matrix[3, 2] + 1,
6
]
# 良くない指標なので変えたい
#def get_avg_accuracy(self) -> float:
# return sum(self.accuracy.values()) / len(self.accuracy)
def to_label_list(self) -> List[int]:
ret = [-1] * 8
ret[0] = 0
ret[1] = self.arch_matrix[1, 0] + 1
ret[2] = self.arch_matrix[2, 0] + 1
ret[3] = self.arch_matrix[2, 1] + 1
ret[4] = self.arch_matrix[3, 0] + 1
ret[5] = self.arch_matrix[3, 1] + 1
ret[6] = self.arch_matrix[3, 2] + 1
ret[7] = 6
return ret
def __str__(self) -> str:
return f'Cell({self.arch_str}, {self.arch_matrix}, {self.accuracy}, {self.flops}, {self.index})'
def __repr__(self) -> str:
return f'Cell(\'{self.arch_str}\', {self.arch_matrix}, {self.accuracy}, {self.flops}, {self.index})'
class NATSBenchWrapper:
def __init__(self):
self.cells: List[Cell] = []
# アーカイブファイルからアーキテクチャの精度などを読み込む(低速)
def load_from_archive(self, data_path: str) -> None:
nats_bench: NATStopology = create(data_path, search_space='topology', fast_mode=True, verbose=False)
self.num_archs: int = len(nats_bench)
for i in tqdm(range(self.num_archs)):
arch_results: ArchResults = nats_bench.query_by_index(i, hp='200')
arch_str: str = arch_results.arch_str
accuracy_dict = {}
flops_dict = {} # 今は使っていない
for dataset_key, dataset_name in [('cifar10-valid', 'cifar10'), ('cifar100', 'cifar100'), ('ImageNet16-120', 'ImageNet')]:
# 精度(%)
more_info = nats_bench.get_more_info(i, dataset_key, hp='200', is_random=False)
accuracy: float = more_info['valid-accuracy']
flops: float = arch_results.get_compute_costs(dataset_key)['flops']
accuracy_dict[dataset_name] = accuracy
flops_dict[dataset_name] = flops
cell = Cell(arch_str, accuracy_dict, flops_dict, i)
self.cells.append(cell)
# csvファイルからアーキテクチャの精度などを読み込む(高速)
def load_from_csv(self, csv_path: str) -> None:
with open(csv_path) as f:
reader = csv.DictReader(f)
i = 0
for dic in reader:
dataset_keys = ['cifar10', 'cifar100', 'ImageNet']
arch_str = dic['arch_str']
accuracy, flops = {}, {}
for dataset in dataset_keys:
accuracy[dataset] = float(dic[f'acc-{dataset}'])
flops[dataset] = float(dic[f'flops-{dataset}'])
cell = Cell(arch_str, accuracy, flops, i)
self.cells.append(cell)
i += 1
self.num_archs: int = len(self.cells)
# アーキテクチャの精度をcsvファイルに保存
def save_to_csv(self, csv_path: str) -> None:
with open(csv_path, mode='w') as f:
writer = csv.writer(f)
writer.writerow([
'arch_str',
'acc-cifar10', 'acc-cifar100', 'acc-ImageNet',
'flops-cifar10', 'flops-cifar100', 'flops-ImageNet'])
for i, cell in enumerate(self.cells):
writer.writerow([
cell.arch_str,
cell.accuracy['cifar10'],
cell.accuracy['cifar100'],
cell.accuracy['ImageNet'],
cell.flops['cifar10'],
cell.flops['cifar100'],
cell.flops['ImageNet'],
])
def __getitem__(self, key) -> Cell:
return self.cells[key]
def __len__(self) -> int:
return self.num_archs
# 変数
wl_kernel_cache: Dict[Tuple[int, int], float] = {}
K_cache: np.ndarray = np.array([])
wl_kernel_time: float = 0
matrix_inv_time: float = 0
matrix_mult_time: float = 0
dropping_out_time: float = 0
K_inv_cache: np.ndarray = np.array([]) #
K_inv_cache_count: int = 0
''' 関数呼び出しのオーバーヘッドが大きいので未使用
def wl_kernel(cell1: Cell, cell2: Cell, H: int = 2) -> float:
global wl_kernel_cache
key = (cell1.index, cell2.index) if cell1.index < cell2.index else (cell2.index, cell1.index)
if key in wl_kernel_cache:
return wl_kernel_cache[key]
wl_kernel_cache[key] = result = wl_kernel_(cell1.label_list, cell2.label_list, H)
return result
'''
# 平均と分散を推定
# mu = k.T * K^-1 * y
# sigma^2 = kernel(x, x) - k.T * K_inv * k
def acquisition_gp_with_wl_kernel(
x: Cell,
data: List[Cell],
K_inv: np.ndarray, # K^-1
K_inv_y: np.ndarray, # K^-1 * y
mean_acc: float
#coeff: float
) -> Tuple[float, float]:
global wl_kernel_cache
global wl_kernel_time
global matrix_mult_time
t = len(data)
# kernel(x, x)
xx_kernel: float
key = (x.index, x.index)
if key in wl_kernel_cache:
xx_kernel = wl_kernel_cache[key]# / coeff
else:
start_t = time.time()
kernel_value = wl_kernel(x.label_list, x.label_list)
xx_kernel = kernel_value# / coeff
wl_kernel_cache[key] = kernel_value
wl_kernel_time += time.time() - start_t
k: np.ndarray = np.empty((t,))
for i in range(t):
c = data[i]
key = (x.index, c.index) if x.index < c.index else (c.index, x.index)
if key in wl_kernel_cache:
k[i] = wl_kernel_cache[key]# / coeff
else:
start_t = time.time()
kernel_value = wl_kernel(x.label_list, c.label_list)
wl_kernel_time += time.time() - start_t
k[i] = kernel_value# / coeff
wl_kernel_cache[key] = kernel_value
# 行列演算
start_t = time.time()
mu: np.ndarray = mean_acc + k @ K_inv_y
k_K_inv: np.ndarray = k @ K_inv
var: np.ndarray = xx_kernel - k_K_inv @ k.T
matrix_mult_time += time.time() - start_t
#
'''
if mu < -10:
k_dot_K_inv_y: np.ndarray = k * K_inv_y
k_dot_K_inv_y = np.array(sorted(k_dot_K_inv_y, key=lambda x: abs(x)))
x_sum = 0
for x in k_dot_K_inv_y:
x_sum += x
print(f'K.shape[0] = {K_inv.shape[0]}')
print('k =')
print(k[:10])
print('K_inv_y =')
print(K_inv_y[:10])
print('k * K_inv_y =')
print((k * K_inv_y)[:10])
print('sorted(k * K_inv_y) =')
print(k_dot_K_inv_y[:10])
print('mu =', mu)
print('mu\' =', sum(k_dot_K_inv_y))
print('x_sum =', x_sum)
print('var =', var)
print('')
'''
return mu, math.sqrt(max(var, 0))
def random_sampler(search_space: List[Cell], sample_indices: List[int], data: List[Cell], hparam: HyperParam):
return random.sample(sample_indices, hparam.B)
def compose_K(data: List[Cell], t: int, B: int) -> np.ndarray:
global wl_kernel_cache
global wl_kernel_time
global K_cache
cached = False
if K_cache.shape[0] == t - B:
K = K_cache
L = np.empty((t - B, B))
LM = np.empty((B, t))
K = np.concatenate([K, L], axis=1)
K = np.concatenate([K, LM], axis=0)
cached = True
else:
K: np.ndarray = np.empty((t, t))
for i in range(t):
j0 = i
if cached and t - B > i: j0 = t - B
for j in range(j0, t):
c1, c2 = data[i], data[j]
key = (c1.index, c2.index)
if key in wl_kernel_cache:
K[i, j] = K[j, i] = wl_kernel_cache[key]
else:
start_t = time.time()
kernel_value = wl_kernel(c1.label_list, c2.label_list)
wl_kernel_time += time.time() - start_t
K[i, j] = K[j, i] = wl_kernel_cache[key] = kernel_value
K_cache = K.copy()
return K
def compose_K_inv(K: np.ndarray, t: int, B: int, is_dropped: bool, recalc_freq: int) -> np.ndarray:
global K_inv_cache
global K_inv_cache_count
global K_INV_RECALC_FREQ
global matrix_inv_time
K_inv: np.ndarray
cached = False
start_t = time.time()
if not is_dropped and K_inv_cache.shape[0] == t:
K_inv = K_inv_cache
cached = True
if K_inv_cache.shape[0] == t - B:
if K_inv_cache_count < recalc_freq - 1:
K_inv = reuse_inverse(K, K_inv_cache, t, B)
K_inv_cache_count += 1
cached = True
if not cached:
K_inv_cache_count = 0
try:
K_inv = np.linalg.inv(K)
except:
print(f'pinv: t = {t}', file=sys.stderr)
K_inv = np.linalg.pinv(K)
K_inv_cache = K_inv
matrix_inv_time += time.time() - start_t
return K_inv
# Kよりも一回り小さい行列の逆行列を利用して、Kの逆行列を計算
# 計算誤差が大きいので不採用
# 参考: https://ja.wikipedia.org/wiki/区分行列
def reuse_inverse(K: np.ndarray, K_inv_cache: np.ndarray, t: int, B: int) -> np.ndarray:
K_t_1_inv: np.ndarray = K_inv_cache
L: np.ndarray = K[:t - B, t - B:]
M: np.ndarray = K[t - B:, t - B:]
K_t_1_inv_L: np.ndarray = K_t_1_inv @ L
S: np.ndarray = M - L.T @ K_t_1_inv_L
S_inv: np.ndarray = np.linalg.inv(S)
K_t_1_inv_L_S_inv: np.ndarray = K_t_1_inv_L @ S_inv
K_inv: np.ndarray = np.empty((t, t))
K_inv[:t - B, :t - B] = K_t_1_inv + K_t_1_inv_L_S_inv @ K_t_1_inv_L.T
K_inv[:t - B, t - B:] = -K_t_1_inv_L_S_inv
K_inv[t - B:, :t - B] = -K_t_1_inv_L_S_inv.T
K_inv[t - B:, t - B:] = S_inv
return K_inv
def gp_with_wl_kernel(
search_space: List[Cell],
sample_indices: List[int], # search_spaceのインデックス
data: List[Cell],
hparam: HyperParam
) -> List[Tuple[float, float]]:
t = len(data) # Kのサイズ
B = hparam.B
global matrix_mult_time
global dropping_out_time
#global K_SIZE_MAX
k_size_max: int = hparam.k_size_max if hparam.k_size_max != None else 20000
musigma_tuples_list: List[List[Tuple[float, float]]] = []
SELECTED_RATE = 0.99
samples: int
if t > k_size_max and hparam.select_mode == 'random':
samples = math.ceil(math.log(1 - SELECTED_RATE) / math.log(1 - k_size_max / t))
else:
samples = 1
K_base: np.ndarray = compose_K(data, t, B)
if hparam.mean0:
mean_acc = 0
else:
mean_acc = statistics.mean([data[i].main_accuracy for i in range(t)])
y_base: np.ndarray = np.array([data[i].main_accuracy - mean_acc for i in range(t)])
for n in range(samples):
# Kの構成とキャッシュ化
K = K_base # ファンシーインデックスはコピーが作成されるので、ビューの代入でOK
y = y_base # ファンシーインデックスはコピーが作成されるので、ビューの代入でOK
sub_data: List[Cell] = copy.copy(data)
if t > k_size_max and hparam.select_mode == 'random':
start_t = time.time()
sorted_remaining_indices: np.ndarray = np.sort(np.random.choice(range(t), k_size_max, replace=False))
K = K[sorted_remaining_indices, :][:, sorted_remaining_indices]
y = y[sorted_remaining_indices]
for i, remainig_index in enumerate(sorted_remaining_indices):
sub_data[i], sub_data[remainig_index] = sub_data[remainig_index], sub_data[i]
sub_data = sub_data[:k_size_max]
dropping_out_time += time.time() - start_t
# 逆行列
K_inv: np.ndarray = compose_K_inv(K, t, B, t >= k_size_max, hparam.recalc_freq)
# 行列演算
start_t = time.time()
K_inv_y: np.ndarray = K_inv @ y # オリジナル
#K_inv_y: np.ndarray = np.linalg.solve(K, y) # 誤差が少ない? srccはあまり変わらず
matrix_mult_time += time.time() - start_t
musigma_tuples: List[Tuple[float, float]] = []
for sample_index in sample_indices:
mu, sigma = acquisition_gp_with_wl_kernel(search_space[sample_index], sub_data, K_inv, K_inv_y, mean_acc)#, coeff)
musigma_tuples.append((mu, sigma))
musigma_tuples_list.append(musigma_tuples)
# medianの効果検証
std_of_mean_list = []
std_of_std_list = []
ret: List[Tuple[float, float]] = []
for i in range(len(sample_indices)):
mu = statistics.median([musigma_tuples_list[j][i][0] for j in range(samples)])
sigma = statistics.median([musigma_tuples_list[j][i][1] for j in range(samples)])
ret.append((mu, sigma))
# medianの効果検証
#if len(sample_indices) == 100 and t in [1100, 1600, 2100, 2600, 3100]:
#mean_list = [musigma_tuples_list[j][i][0] for j in range(samples)]
#std_list = [musigma_tuples_list[j][i][1] for j in range(samples)]
#print(i, statistics.mean(mean_list), statistics.stdev(mean_list), statistics.median(mean_list), min(mean_list), max(mean_list))
#std_of_mean_list.append(statistics.stdev(mean_list))
#std_of_std_list.append(statistics.stdev(std_list))
# medianの効果検証
#print(t, len(sample_indices))
#if len(sample_indices) == 100 and t in [1100, 1600, 2100, 2600, 3100]:#t == 3100:
#print('mean')
#print(t - 100, statistics.mean(std_of_mean_list))
#print(statistics.stdev(std_of_mean_list))
#print(statistics.median(std_of_mean_list))
#print(min(std_of_mean_list))
#print(max(std_of_mean_list))
#print('std')
#print(statistics.mean(std_of_std_list))
#print(statistics.stdev(std_of_std_list))
#print(statistics.median(std_of_std_list))
#print(min(std_of_std_list))
#print(max(std_of_std_list))
return ret
def gp_with_wl_kernel_sampler(
search_space: List[Cell],
sample_indices: List[int], # search_spaceのインデックス
data: List[Cell],
hparam: HyperParam
) -> List[int]:
itr = (len(data) - hparam.D) // hparam.B # イテレーション回数
gamma = 3 * math.sqrt(1/2 * math.log(2 * (itr + 1)))
musigma_tuples = gp_with_wl_kernel(search_space, sample_indices, data, hparam)
index_musigma_tuples = list(zip(sample_indices, musigma_tuples))
index_musigma_tuples = sorted(index_musigma_tuples, key=lambda x: x[1][0] + gamma * x[1][1], reverse=True)[:hparam.B]
ret = [t[0] for t in index_musigma_tuples]
return ret
def search(
sampler: Callable[[Any], List[int]],
wrapper: NATSBenchWrapper, data: List[Cell], search_space: List[Cell],
hparam: HyperParam
) -> List[float]:
global wl_kernel_time
global dropping_out_time
for t in range(hparam.T):
sample_indices: List[int] = random.sample(range(len(search_space)), hparam.P) # search_spaceのインデックス
trained_indices: List[int] = sampler(search_space, sample_indices, data, hparam) # search_spaceのインデックス
# データに追加
for index in trained_indices:
data.append(search_space[index])
# 提案手法のうちの1つ
# 類似性に基づいて行列サイズを抑え、過学習を抑制
SIM_REVERSE = False # 類似度の低いものを取り除く場合
SIM_DONT_CARE = False # ランダムに取り除く場合
if hparam.select_mode == 'similarity' and hparam.k_size_max != None and len(data) > hparam.k_size_max:
start_t = time.time()
while len(data) > hparam.k_size_max:
if SIM_REVERSE:
min_diff: float = 1000000
min_diff_indices: Tuple[int, int] = (-1, -1)
for i in range(len(data)):
for j in range(i + 1, len(data)):
# i < j の組み合わせ全て
c1, c2 = data[i], data[j]
key = (c1.index, c2.index)
if key in wl_kernel_cache:
diff = wl_kernel_cache[key]
else:
start_t1 = time.time()
kernel_value = wl_kernel(c1.label_list, c2.label_list)
wl_kernel_time += time.time() - start_t1
dropping_out_time -= time.time() - start_t1
diff = wl_kernel_cache[key] = kernel_value
diff += random.random() / 16
if diff < min_diff:
min_diff = diff
min_diff_indices = (i, j)
sum_diff = [random.random() / 16, random.random() / 16]
for j in range(2):
for i in range(len(data)):
c1, c2 = data[min_diff_indices[j]], data[i]
key = (c1.index, c2.index) if c1.index < c2.index else (c2.index, c1.index)
if key in wl_kernel_cache:
sum_diff[j] += wl_kernel_cache[key]
else:
start_t1 = time.time()
kernel_value = wl_kernel(c1.label_list, c2.label_list)
wl_kernel_time += time.time() - start_t1
dropping_out_time -= time.time() - start_t1
wl_kernel_cache[key] = kernel_value
sum_diff[j] += kernel_value
dropped_index = min_diff_indices[0] if sum_diff[0] < sum_diff[1] else min_diff_indices[1]
data.pop(dropped_index)
continue
if SIM_DONT_CARE:
data.pop(random.randrange(len(data)))
continue
max_diff: float = 0.
max_diff_indices: Tuple[int, int] = (-1, -1)
for i in range(len(data)):
for j in range(i + 1, len(data)):
# i < j の組み合わせ全て
c1, c2 = data[i], data[j]
key = (c1.index, c2.index)
if key in wl_kernel_cache:
diff = wl_kernel_cache[key]
else:
start_t1 = time.time()
kernel_value = wl_kernel(c1.label_list, c2.label_list)
wl_kernel_time += time.time() - start_t1
dropping_out_time -= time.time() - start_t1
diff = wl_kernel_cache[key] = kernel_value
diff += random.random() / 16
if diff > max_diff:
max_diff = diff
max_diff_indices = (i, j)
sum_diff = [random.random() / 16, random.random() / 16]
for j in range(2):
for i in range(len(data)):
c1, c2 = data[max_diff_indices[j]], data[i]
key = (c1.index, c2.index) if c1.index < c2.index else (c2.index, c1.index)
if key in wl_kernel_cache:
sum_diff[j] += wl_kernel_cache[key]
else:
start_t1 = time.time()
kernel_value = wl_kernel(c1.label_list, c2.label_list)
wl_kernel_time += time.time() - start_t1
dropping_out_time -= time.time() - start_t1
wl_kernel_cache[key] = kernel_value
sum_diff[j] += kernel_value
dropped_index = max_diff_indices[0] if sum_diff[0] > sum_diff[1] else max_diff_indices[1]
data.pop(dropped_index)
dropping_out_time += time.time() - start_t
# 学習したインデックスを大きい順にソート
trained_indices.sort(reverse=True)
# search_spaceから学習したものを取り除く
for index in trained_indices:
search_space.pop(index)
ret = sorted([cell.main_accuracy for cell in data[hparam.D:]], reverse=True) # これの計算時間は問題にならない
return ret
def accuracy_compare(wrapper: NATSBenchWrapper, hparam: HyperParam) -> Dict[str, List[float]]:
'''
ランダムとWLカーネルのGPに対応
'''
hparam = copy.copy(hparam)
if hparam.gpu:
global np
import cupy
np = cupy
T = hparam.T
hparam.T = 1
random_results = []
gpwl_results = []
if hparam.seed is not None:
random.seed(hparam.seed)
random.shuffle(wrapper.cells)
data = wrapper[:hparam.D]
search_space = wrapper[hparam.D:]
for t in range(T):
r = search(random_sampler, wrapper, data, search_space, hparam)
random_results.append(sum(r[:hparam.eval_length]) / len(r[:hparam.eval_length]))
if hparam.seed is not None:
random.seed(hparam.seed)
random.shuffle(wrapper.cells)
data = wrapper[:hparam.D]
search_space = wrapper[hparam.D:]
for t in range(T):
r = search(gp_with_wl_kernel_sampler, wrapper, data, search_space, hparam)
# 以下は上位hparam.eval_length個のアーキテクチャの平均精度を記録する場合のコード
#gpwl_results.append(sum(r[:hparam.eval_length]) / len(r[:hparam.eval_length]))
# 以下は、上位hparam.eval_length番目のアーキテクチャの精度を記録する場合のコード
if len(r) >= hparam.eval_length:
gpwl_results.append(r[hparam.eval_length - 1])
else:
gpwl_results.append(0)
return {'Random': random_results, 'GP with WL-Kernel': gpwl_results}
def time_compare(wrapper: NATSBenchWrapper, hparam: HyperParam) -> Dict[str, np.ndarray]:
'''
WLカーネルのGP
'''
hparam = copy.copy(hparam)
if hparam.gpu:
global np
import cupy
np = cupy
T = hparam.T
hparam.T = 1
ret: Dict[str, List[float]] = {}
keys = ['Total', 'WLKernel', 'MatrixMult', 'MatrixInv']
if hparam.k_size_max != None:
keys.append('DroppingOut')
keys.append('Others')
for key in keys:
ret[key] = []
if hparam.seed is not None:
random.seed(hparam.seed)
random.shuffle(wrapper.cells)
data = wrapper[:hparam.D]
search_space = wrapper[hparam.D:]
for t in range(T):
start_t = time.time()
_ = search(gp_with_wl_kernel_sampler, wrapper, data, search_space, hparam)
ret['Total'].append(time.time() - start_t)
ret['WLKernel'].append(wl_kernel_time)
ret['MatrixMult'].append(matrix_mult_time)
ret['MatrixInv'].append(matrix_inv_time)
if hparam.k_size_max != None:
ret['DroppingOut'].append(dropping_out_time)
for key in filter(lambda k: k != 'Others', keys):
ret[key] = numpy.array(ret[key])
ret['Total'] = numpy.cumsum(ret['Total'])
ret['Others'] = ret['Total'].copy()
for key in filter(lambda k: k != 'Total' and k != 'Others', keys):
ret['Others'] -= ret[key]
return ret
def get_ranks(array: List[float]) -> List[int]:
tmp = np.array(array).argsort()
ranks = np.empty_like(tmp)
ranks[tmp] = np.arange(len(array))
ranks = len(array) - ranks
return ranks.tolist()
def spearman_rcc(values1: List[float], values2: List[float]) -> float:
ranks1 = get_ranks(values1)
ranks2 = get_ranks(values2)
d2 = 0
for rank1, rank2 in zip(ranks1, ranks2):
d2 += (rank1 - rank2) ** 2
N = len(values1)
return 1 - 6 * d2 / (N * N * N - N)
def srcc_eval(wrapper: NATSBenchWrapper, hparam: HyperParam) -> Dict[str, numpy.ndarray]:
'''
ランダムとWLカーネルのGPに対応
'''
hparam = copy.copy(hparam)
if hparam.gpu:
global np
import cupy
np = cupy
T = hparam.T
eval_freq: int = hparam.eval_freq_srcc
eval_archs: int = hparam.eval_archs_srcc
search_loops = T // eval_freq
hparam.T = eval_freq
srcc_list: numpy.ndarray = numpy.zeros((search_loops,))
top_acc: numpy.ndarray = numpy.zeros((search_loops,))
random.shuffle(wrapper.cells)
data: List[Cell] = wrapper[:hparam.D]
search_space: List[Cell] = wrapper[hparam.D:]
for t in range(search_loops):
_ = search(gp_with_wl_kernel_sampler, wrapper, data, search_space, hparam)
# 探索空間からeval_archs個取り出す
sample_indices: List[int] = random.sample(range(len(search_space)), eval_archs) # search_spaceのインデックス
musigma_tuples = gp_with_wl_kernel(search_space, sample_indices, data, hparam)
true_accs = [search_space[sample_index].main_accuracy for sample_index in sample_indices]
pred_accs = [tp[0] for tp in musigma_tuples]
srcc_list[t] = spearman_rcc(true_accs, pred_accs)
list_of_tuple = sorted(zip(pred_accs, true_accs), reverse=True) # 精度が高そうな順に並び変え
expected_accs = list(list(zip(*list_of_tuple))[1]) # 精度が高そうなもの順に,真の精度を並び替え
acc = statistics.mean(expected_accs[:10]) # 精度が高そうなアーキテクチャ上位10個の真の精度の平均
top_acc[t] = acc
return {'srcc': srcc_list, 'acc': top_acc}