Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Problem mesh MPI #1438

Closed
lberti opened this issue Mar 3, 2020 · 1 comment
Closed

Problem mesh MPI #1438

lberti opened this issue Mar 3, 2020 · 1 comment

Comments

@lberti
Copy link
Collaborator

lberti commented Mar 3, 2020

I have this error when starting a simulation with the fluid toolbox. Sometimes I get it, other times the simulation starts. In this case, I used the mesh file instead of the .geo . I have used the Gmsh partition option=1.

terminate called after throwing an instance of 'boost::wrapexcept<boost::mpi::exception>' what(): MPI_Test: MPI_ERR_TRUNCATE: message truncated *** Aborted at 1583238183 (unix time) try "date -d @1583238183" if you are using GNU date *** PC: @ 0x0 (unknown) *** SIGABRT (@0x87b00020b03) received by PID 133891 (TID 0x7fe6de4e8500) from PID 133891; stack trace: *** @ 0x7fe67f582390 (unknown) @ 0x7fe67b53e428 gsignal @ 0x7fe67b54002a abort @ 0x7fe67ee32af3 __gnu_cxx::__verbose_terminate_handler() terminate called after throwing an instance of ' @ 0x7fe67ee38a56 __cxxabiv1::__terminate() boost::wrapexcept<boost::mpi::exception>' what(): MPI_Test: MPI_ERR_TRUNCATE: message truncated @ 0x7fe67ee38a91 std::terminate() *** Aborted at 1583238183 (unix time) try "date -d @1583238183" if you are using GNU date *** @ 0x7fe67ee38cc3 __cxa_throw PC: @ 0x0 (unknown) *** SIGABRT (@0x87b00020b12) received by PID 133906 (TID 0x7f0d6cd03500) from PID 133906; stack trace: *** @ 0x7f0d0dd9d390 (unknown) @ 0x7fe6a8166135 boost::throw_exception<>() @ 0x7f0d09d59428 gsignal @ 0x7f0d09d5b02a abort @ 0x7f0d0d64daf3 __gnu_cxx::__verbose_terminate_handler() @ 0x7f0d0d653a56 __cxxabiv1::__terminate() @ 0x7fe6a8735d10 boost::mpi::request::handle_dynamic_primitive_array_irecv<>() @ 0x7f0d0d653a91 std::terminate() @ 0x7fe6a3d801d2 boost::mpi::request::test() @ 0x7f0d0d653cc3 __cxa_throw @ 0x7f0d36981135 boost::throw_exception<>() @ 0x7f0d36f50d10 boost::mpi::request::handle_dynamic_primitive_array_irecv<>() @ 0x7fe6cdd5831a boost::mpi::wait_all<>() @ 0x7f0d3259b1d2 boost::mpi::request::test() @ 0x7fe6a8d8891f Feel::Mesh<>::updateEntitiesCoDimensionGhostCellByUsingNonBlockingComm() @ 0x7f0d5c57331a boost::mpi::wait_all<>() @ 0x7fe6a8d85871 Feel::Mesh<>::updateForUse() @ 0x7f0d375a391f Feel::Mesh<>::updateEntitiesCoDimensionGhostCellByUsingNonBlockingComm() @ 0x7fe6a8d7934a Feel::Mesh<>::createP1mesh() @ 0x7f0d375a0871 Feel::Mesh<>::updateForUse() @ 0x7f0d3759434a Feel::Mesh<>::createP1mesh() @ 0x7fe6abbfe188 Feel::FeelModels::MeshALE<>::MeshALE() @ 0x7fe6c1413940 Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7f0d3a419188 Feel::FeelModels::MeshALE<>::MeshALE() @ 0x7f0d4fc2e940 Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7fe6c141376c Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7fe6c141351e Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7f0d4fc2e76c Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7f0d4fc2e51e Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7fe6c141344b Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7f0d4fc2e44b Feel::FeelModels::boost_param_default_362meshale<>() @ 0x7fe6c101eb32 Feel::FeelModels::FluidMechanics<>::createALE() @ 0x7f0d4f839b32 Feel::FeelModels::FluidMechanics<>::createALE() @ 0x7f0d4f857321 Feel::FeelModels::FluidMechanics<>::init() @ 0x41e141 Feel::runApplicationFluid<>() @ 0x415fa8 main @ 0x7fe6c103c321 Feel::FeelModels::FluidMechanics<>::init() @ 0x7f0d09d44830 __libc_start_main

@romainhild
Copy link
Contributor

It is linked to #1296 @vincentchabannes is already looking into it I think

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants