grues_vs_corr-thresh.json

{
  "benchmark_setup": {
    "data": [
      {
        "graph_id": "n=5 avg_ngh=1",
        "parameters_id": "SEM",
        "data_id": "standardized",
        "seed_range": [1, 5]
      },
      {
        "graph_id": "n=5 avg_ngh=2",
        "parameters_id": "SEM",
        "data_id": "standardized",
        "seed_range": [1, 5]
      },
      {
        "graph_id": "n=5 avg_ngh=3",
        "parameters_id": "SEM",
        "data_id": "standardized",
        "seed_range": [1, 5]
      }
    ],
    "evaluation": {
      "benchmarks": {
        "filename_prefix": "grues_test/",
        "show_seed": false,
        "errorbar": true,
        "errorbarh": false,
        "scatter": true,
        "path": true,
        "text": true,
        "ids": ["corr", "grues"]
      },
      "graph_true_plots": true,
      "graph_true_stats": false,
      "ggally_ggpairs": false,
      "graph_plots": ["corr", "grues"],
      "mcmc_traj_plots": [
        {
          "id": "grues",
          "burn_in": 0.5,
          "thinning": 5,
          "functional": ["score"],
          "active": false
        }
      ],
      "mcmc_heatmaps": [],
      "mcmc_autocorr_plots": [
        {
          "id": "grues",
          "burn_in": 0.5,
          "thinning": 1,
          "lags": 50,
          "functional": ["score"],
          "active": false
        }
      ]
    }
  },
  "resources": {
    "data": {
      "iid": [
        {
          "id": "standardized",
          "standardized": true,
          "n": 300
        }
      ]
    },
    "graph": {
      "pcalg_randdag": [
        {
          "id": "n=5 avg_ngh=1",
          "max_parents": 4,
          "n": 5,
          "d": 1,
          "par1": null,
          "par2": null,
          "method": "er",
          "DAG": true
        },
        {
          "id": "n=5 avg_ngh=2",
          "max_parents": 4,
          "n": 5,
          "d": 2,
          "par1": null,
          "par2": null,
          "method": "er",
          "DAG": true
        },
        {
          "id": "n=5 avg_ngh=3",
          "max_parents": 4,
          "n": 5,
          "d": 3,
          "par1": null,
          "par2": null,
          "method": "er",
          "DAG": true
        }
      ]
    },
    "parameters": {
      "sem_params": [
        {
          "id": "SEM",
          "min": 0.01,
          "max": 1
        }
      ]
    },
    "structure_learning_algorithms": {
      "corr_thresh": [
        {
          "id": "corr",
          "timeout": null,
          "thresh": [0.25]
        }
      ],
      "grues": [
        {
          "id": "grues",
          "prior_n_sources": 2,
          "burnin_frac": 0.9,
          "mcmc_estimator": "map",
          "threshold": 0.5,
          "mcmc_seed": [1],
          "n_iterations": 10000,
          "timeout": null
        }
      ]
    }
  }
}