bamPEFragmentSize.rst

bamPEFragmentSize

Note

This tool accepts only one BAM file at a time.

Example usage

$ deepTools2.0/bin/bamPEFragmentSize \
-hist fragmentSize.png \
-T "Fragment size of PE RNA-seq data" \
testFiles/RNAseq.bam 

 Sample size: 12850

Fragment lengths:
    Min.: 0.0
    1st Qu.: 313.0
    Mean: 2597.03237354
    Median: 357.0
    3rd Qu.: 2726.0
    Max.: 384622.0
    Std: 7066.11863701

Read lengths:
    Min.: 20.0
    1st Qu.: 101.0
    Mean: 99.4182101167
    Median: 101.0
    3rd Qu.: 101.0
    Max.: 101.0
    Std: 7.64455778462